PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65839.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SBP

Protein Properties

Length: 872aa MW: 95887.2 Da PI: 7.423

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65839.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.8	3.7e-39	134	210	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C+++ls ak+yh+rhkvCevhska+++lv +++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk + EPS65839.1 134 VCQVDACNENLSAAKDYHKRHKVCEVHSKAAEALVGKQTQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKIH 210 6*************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.8E-32	127	196	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.034	132	209	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-35	133	211	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-29	135	208	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence Send to blast
MEEAGSQVVT PIVSYQNMVG RYCVSHPVPK KRSGLHYHPP NAANTSKAWS ADGWDWDSAR 60 FIAKPSQCSE VTERTDRGAS VKPESNHPIG EDVENLRENG ETDSAEPQNA SRPVKKARPG 120 SPSGSGGANS NYPVCQVDAC NENLSAAKDY HKRHKVCEVH SKAAEALVGK QTQRFCQQCS 180 RFHPLAEFDE GKRSCRRRLA GHNRRRRKIH SEENNQPLLL PQTLDPNLGN PNLVNLLVAL 240 SHAQRNNRDT SISAPDKSQL IRFISSPNPS VPGALTASPQ VKGSLHNNHV FNGIPIDRKN 300 ASPSTKDLLG VLTPTPSSEM QSSQTSTQGS DSEKSKSSSA DESAHLNLHG GKLKEFPILG 360 KERSSTACDN KTTPFLLLGY SSEDCVAKKS QTDLNLSLAS NPVVTHDFFA IEISKEKSKE 420 DDLPGSRGEM LKKDNVDLRN FCGTSLRLFG GSPEPGENCS FRSSPEQIEQ PSTSGSNHSP 480 SSLNSDSLDP TGRIIFKLFD KDPAQLPGSL RMQIYNWLSK SPSDMESHIR PGCILLSLYI 540 SMPTFAWDQA KNLLDYVKSL AVDIDAHFWG TARFLVYTDR QMASFNEGKT RLCRSWRTEA 600 APELISVSPL AVVRGQATSL LLKGRRLLTP GTKIHCTSAV GFCIRKKPTS CQGSVLDEVI 660 VDNFEIIGGS ASSDLGRCYI EVEIGLKGSS FPLIVADQSI CDELVFLERD IEACVPDVGR 720 WSREQALHFL HELGWLFQRK RGRFSPAAPA YCLARLKFLL IFSVDHDFPA VVKTLLDVLL 780 ELNLSGETSE RESLEMLSEI HLLNRAVQQR SRSMATMLIN YSVIDPADHS KKRYIFAPNV 840 AGPGGLTPLH LAACLSREDE LVDALTSDPL EV

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence Send to blast

MEEAGSQVVT PIVSYQNMVG RYCVSHPVPK KRSGLHYHPP NAANTSKAWS ADGWDWDSAR  60
FIAKPSQCSE VTERTDRGAS VKPESNHPIG EDVENLRENG ETDSAEPQNA SRPVKKARPG  120
SPSGSGGANS NYPVCQVDAC NENLSAAKDY HKRHKVCEVH SKAAEALVGK QTQRFCQQCS  180
RFHPLAEFDE GKRSCRRRLA GHNRRRRKIH SEENNQPLLL PQTLDPNLGN PNLVNLLVAL  240
SHAQRNNRDT SISAPDKSQL IRFISSPNPS VPGALTASPQ VKGSLHNNHV FNGIPIDRKN  300
ASPSTKDLLG VLTPTPSSEM QSSQTSTQGS DSEKSKSSSA DESAHLNLHG GKLKEFPILG  360
KERSSTACDN KTTPFLLLGY SSEDCVAKKS QTDLNLSLAS NPVVTHDFFA IEISKEKSKE  420
DDLPGSRGEM LKKDNVDLRN FCGTSLRLFG GSPEPGENCS FRSSPEQIEQ PSTSGSNHSP  480
SSLNSDSLDP TGRIIFKLFD KDPAQLPGSL RMQIYNWLSK SPSDMESHIR PGCILLSLYI  540
SMPTFAWDQA KNLLDYVKSL AVDIDAHFWG TARFLVYTDR QMASFNEGKT RLCRSWRTEA  600
APELISVSPL AVVRGQATSL LLKGRRLLTP GTKIHCTSAV GFCIRKKPTS CQGSVLDEVI  660
VDNFEIIGGS ASSDLGRCYI EVEIGLKGSS FPLIVADQSI CDELVFLERD IEACVPDVGR  720
WSREQALHFL HELGWLFQRK RGRFSPAAPA YCLARLKFLL IFSVDHDFPA VVKTLLDVLL  780
ELNLSGETSE RESLEMLSEI HLLNRAVQQR SRSMATMLIN YSVIDPADHS KKRYIFAPNV  840
AGPGGLTPLH LAACLSREDE LVDALTSDPL EV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-30	124	208	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00664	PBM	Transfer from Potri.002G002400	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083361.1	0.0	squamosa promoter-binding-like protein 14
TrEMBL	S8CG24	0.0	S8CG24_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.C00339.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12887	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-159	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]