PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65686.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

NAC

Protein Properties

Length: 213aa MW: 24657.1 Da PI: 9.5185

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65686.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.2	9.6e-34	4	78	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +e ewyfF+ rd+ky+tg r+nratk+gyWkatgkdke+++ + lvg+kktLvfy+grapkg+kt+Wvmheyrl EPS65686.1 4 MGEVEWYFFCVRDRKYPTGLRTNRATKQGYWKATGKDKEIFR-AKVLVGMKKTLVFYRGRAPKGQKTHWVMHEYRL 78 46679***********************************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.465	1	97	IPR003441	NAC domain
SuperFamily	SSF101941	4.18E-38	3	97	IPR003441	NAC domain
Pfam	PF02365	1.4E-16	9	78	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MAKMGEVEWY FFCVRDRKYP TGLRTNRATK QGYWKATGKD KEIFRAKVLV GMKKTLVFYR 60 GRAPKGQKTH WVMHEYRLHT KIAADQKEWV ISRVFMKSHG GKKVHMSRII RTPDAGEASF 120 SGDMPPLINH SGERMSPSSN QILFSCKDQQ SLLLKRFVEN DRGVRKQFPK EEEGEELLPD 180 IAGESDLTTG CDYDDDFQNC FWNNYSFLEG NGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-29	2	103	69	174	NAC domain-containing protein 19
3swm_B	2e-29	2	103	69	174	NAC domain-containing protein 19
3swm_C	2e-29	2	103	69	174	NAC domain-containing protein 19
3swm_D	2e-29	2	103	69	174	NAC domain-containing protein 19
3swp_A	2e-29	2	103	69	174	NAC domain-containing protein 19
3swp_B	2e-29	2	103	69	174	NAC domain-containing protein 19
3swp_C	2e-29	2	103	69	174	NAC domain-containing protein 19
3swp_D	2e-29	2	103	69	174	NAC domain-containing protein 19
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022884096.1	2e-60	NAC domain-containing protein 92-like
Refseq	XP_022884097.1	2e-60	NAC domain-containing protein 92-like
Refseq	XP_022884098.1	2e-60	NAC domain-containing protein 92-like
Refseq	XP_022884099.1	2e-60	NAC domain-containing protein 92-like
Swissprot	Q9FLR3	3e-58	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	S8CLN0	1e-160	S8CLN0_9LAMI; Goblet
STRING	XP_009376289.1	1e-57	(Pyrus x bretschneideri)
STRING	XP_009761662.1	1e-57	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	1e-60	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]