PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65647.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARR-B
Protein Properties Length: 353aa    MW: 39239.9 Da    PI: 6.7926
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65647.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like93.61.6e-29189242155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++Fv+av+qL G+ekA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  EPS65647.1 189 KPRVVWSVELHQQFVNAVNQL-GIEKAVPKKILELMNVPGLTRENVASHLQKYRL 242
                 79*******************.********************************8 PP
2Response_reg71.63.1e-2491171109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   +l+vdD+ + +++++++l++  y ev+ ++ +e al+ll++++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a + ++ + + +  Ga 
    EPS65647.1   9 ILLVDDDLICLKIVEKMLQNCLY-EVTKCTRAENALKLLRDNKdgYDIVLSDVHMPDMDGFKLLERVGLEM-DLPVIMMSADDGKDVVMKGVTHGAC 103
                   89*********************.***************888889**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ + +l +
    EPS65647.1 104 DYLIKPITMGALKN 117
                   *******9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.5E-1541352IPR017053Response regulator B-type, plant
SuperFamilySSF521728.97E-346127IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.0E-416137No hitNo description
SMARTSM004483.5E-277119IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.5298123IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.4E-219117IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.69E-2510122No hitNo description
PROSITE profilePS5129410.098186245IPR017930Myb domain
SuperFamilySSF466893.76E-20187246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-30188247IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-25189242IPR006447Myb domain, plants
PfamPF002492.9E-8191241IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
GQFPAGLRIL LVDDDLICLK IVEKMLQNCL YEVTKCTRAE NALKLLRDNK DGYDIVLSDV  60
HMPDMDGFKL LERVGLEMDL PVIMMSADDG KDVVMKGVTH GACDYLIKPI TMGALKNIWQ  120
HVVRKKKHGW KDKELDQSGS EDGEKAQRLL EDVDCTSSAN EATWKSSNKK RKDEEDEGDD  180
RDDSSALKKP RVVWSVELHQ QFVNAVNQLG IEKAVPKKIL ELMNVPGLTR ENVASHLQKY  240
RLYLRRLSVT QQGGLAGSFL GNSEGPFGAL HGLELQAAFA SSPQSLATIQ AAAFSRTPPI  300
KTGQSLVDQR SIFSFENPKI RFMDGQAQAD NTKQTHLLHG IPTNMDSKQL AAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-22185248164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071400.10.0two-component response regulator ARR2 isoform X2
SwissprotQ9ZWJ91e-147ARR2_ARATH; Two-component response regulator ARR2
TrEMBLS8E0060.0S8E006_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009801563.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-139response regulator 2
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  3. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  4. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  5. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  6. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  7. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  8. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  9. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  10. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]