PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS65358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 110aa MW: 12379.2 Da PI: 11.1757 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.9e-10 | 1 | 23 | 23 | 46 |
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 +W++Ia++mg +Rt++++k++w++ EPS65358.1 1 RWSAIAAHMG-NRTDNEIKNYWNT 23 4*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.6 | 1 | 29 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-12 | 1 | 36 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-6 | 1 | 25 | No hit | No description |
Pfam | PF00249 | 6.9E-8 | 1 | 23 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.24E-8 | 1 | 36 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 110 aa Download sequence Send to blast |
RWSAIAAHMG NRTDNEIKNY WNTRLKKRLT RMGIDPVTHK PRNGIAAQSK HAAHLSHMAQ 60 WEAARLEAEA RLAGRESRLP HSDVQKKTIA AAPPHPPPPC LDVLKVWQAT |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012847598.1 | 1e-38 | PREDICTED: myb-related protein 306-like | ||||
Refseq | XP_027148166.1 | 2e-38 | transcription factor MYB16-like | ||||
Refseq | XP_027152537.1 | 2e-38 | transcription factor MYB16-like | ||||
Swissprot | Q9LE63 | 8e-32 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | S8DQP9 | 8e-75 | S8DQP9_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.L01264.1.p | 5e-38 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G01140.1 | 2e-24 | myb domain protein 106 |
Publications ? help Back to Top | |||
---|---|---|---|
|