PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65214.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 350aa MW: 39564.1 Da PI: 9.2374

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65214.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.2	2.9e-15	54	144	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ +++Liea + +l+rg+l++++W++vs+ + +++r+ +qCk++++ ++k++k +k+ + + + + +s++++f++l+ EPS65214.1 54 CWSEEATRTLIEAWGSHYLQLNRGNLRQKHWQAVSDIVnarhgLTPKLKRTDVQCKNRIDTIKKKFKVEKAKAARSRGRYVSSWSHFRSLD 144 7***********************************96555555679*********************9999999*****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.9E-24	52	146	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
SSPPPAASPS PSPDQHTYEE DKASLSRSPP EHRISPSHPA PAGLNPGFPT REDCWSEEAT 60 RTLIEAWGSH YLQLNRGNLR QKHWQAVSDI VNARHGLTPK LKRTDVQCKN RIDTIKKKFK 120 VEKAKAARSR GRYVSSWSHF RSLDSLIGDS PNPSGATKIA KNARRRDVSS PEKSPSPSPP 180 PPPPPSSVNP RRASGHLQSW SVPVGLRSKR TGAGPGSLTE RNFSVMAAAA AAMEAKKDDR 240 YRDEEEEEEE EEEEEEEVED EEDNSKTPAR QPKRKRHTQR TTPPPFMEEG YKKIAEAIEK 300 LSEIYEKVEA SKQRQIAELE KQRIQFAKDL ELQRMQMFVE SQIELEKLKR

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

SSPPPAASPS PSPDQHTYEE DKASLSRSPP EHRISPSHPA PAGLNPGFPT REDCWSEEAT  60
RTLIEAWGSH YLQLNRGNLR QKHWQAVSDI VNARHGLTPK LKRTDVQCKN RIDTIKKKFK  120
VEKAKAARSR GRYVSSWSHF RSLDSLIGDS PNPSGATKIA KNARRRDVSS PEKSPSPSPP  180
PPPPPSSVNP RRASGHLQSW SVPVGLRSKR TGAGPGSLTE RNFSVMAAAA AAMEAKKDDR  240
YRDEEEEEEE EEEEEEEVED EEDNSKTPAR QPKRKRHTQR TTPPPFMEEG YKKIAEAIEK  300
LSEIYEKVEA SKQRQIAELE KQRIQFAKDL ELQRMQMFVE SQIELEKLKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012832936.1	1e-89	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	S8CE22	0.0	S8CE22_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M00262.1.p	5e-89	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	4e-30	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]