PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS65108.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C3H

Protein Properties

Length: 726aa MW: 80903 Da PI: 6.7602

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS65108.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.9	3.5e-08	138	162	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 lC+ a+tG C+yG++C+F+H+ EPS65108.1 138 LCPEVAKTGdfsSCPYGENCRFSHD 162 8***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.014	133	164	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.2E-4	133	163	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	137	163	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-5	138	162	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	99	174	199	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.601	177	202	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	9.0E-73	370	613	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	9.34E-93	374	609	No hit	No description
SuperFamily	SSF51395	3.11E-63	374	687	No hit	No description
Pfam	PF01207	2.1E-51	377	626	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	458	476	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002943	Biological Process	tRNA dihydrouridine synthesis
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MTSVNNRKAT QVFSSDRESE YWSVLRTKSL PLEFQPCIGI SEFPLAQSCR IGAMASVAVA 60 EAHPSPEELV AKARAPVKIQ FLCPPPPRNS DEKLAAKGDG TVLAGDDVTG STSILTEKKS 120 KRQLKRERRQ ELKSSSHLCP EVAKTGDFSS CPYGENCRFS HDVDAFNAQK PQDLDGVCPF 180 LNEERPCPYG LSCRFSGTHK VTDTGIASED ASKAKRDIEM NLLRKNVQKL LWKNKMKFPK 240 AHASLKFLAQ EKKKINDDDD DDDNGGVLMA RVPGDIVQDG RSVGSDAAMD EMDCVAQIDK 300 IDGSDISDEQ GLSKKTKCSN DESCLLPSSD EQDSHKKIVY ESHEKSITDC SVDENDKSLK 360 LHPREKKLID FRGKLYLAPL TTVGNLPFRR VCKALGADVT CGEMAMCTNL LQGQASEWAL 420 LRRHSSEDLF GVQICGAYPD TVTKTVELIE QQCMVDFIDI NMGCPIDVVV NKGAGSALLT 480 KPMRMKSVVE ASCRAVDTPL TIKVRTGYFE GKNRIDSLIS DIGNWGACSI TIHGRTRQQR 540 YSKLADWDYI YQCARGAPKT LQVLGNGDVF SYVDWNNHMS SCPELASCMI ARGALIKPWI 600 FTEIKEQRHW DISSGERLDM LKDYARFGLQ HWGSDSKGVE TTRHFLLEWL SYCCRYIPVS 660 LLDVIPQKIN WRPPSYFGRD DMETLMASES AADWIRISEM LLGKVPSGFT FSPKHKSNAY 720 DKAENG

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MTSVNNRKAT QVFSSDRESE YWSVLRTKSL PLEFQPCIGI SEFPLAQSCR IGAMASVAVA  60
EAHPSPEELV AKARAPVKIQ FLCPPPPRNS DEKLAAKGDG TVLAGDDVTG STSILTEKKS  120
KRQLKRERRQ ELKSSSHLCP EVAKTGDFSS CPYGENCRFS HDVDAFNAQK PQDLDGVCPF  180
LNEERPCPYG LSCRFSGTHK VTDTGIASED ASKAKRDIEM NLLRKNVQKL LWKNKMKFPK  240
AHASLKFLAQ EKKKINDDDD DDDNGGVLMA RVPGDIVQDG RSVGSDAAMD EMDCVAQIDK  300
IDGSDISDEQ GLSKKTKCSN DESCLLPSSD EQDSHKKIVY ESHEKSITDC SVDENDKSLK  360
LHPREKKLID FRGKLYLAPL TTVGNLPFRR VCKALGADVT CGEMAMCTNL LQGQASEWAL  420
LRRHSSEDLF GVQICGAYPD TVTKTVELIE QQCMVDFIDI NMGCPIDVVV NKGAGSALLT  480
KPMRMKSVVE ASCRAVDTPL TIKVRTGYFE GKNRIDSLIS DIGNWGACSI TIHGRTRQQR  540
YSKLADWDYI YQCARGAPKT LQVLGNGDVF SYVDWNNHMS SCPELASCMI ARGALIKPWI  600
FTEIKEQRHW DISSGERLDM LKDYARFGLQ HWGSDSKGVE TTRHFLLEWL SYCCRYIPVS  660
LLDVIPQKIN WRPPSYFGRD DMETLMASES AADWIRISEM LLGKVPSGFT FSPKHKSNAY  720
DKAENG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	4e-26	371	621	27	269	tRNA-dihydrouridine synthase B
6ei9_B	4e-26	371	621	27	269	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088543.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X1
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	S8DPT5	0.0	S8DPT5_9LAMI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	Migut.B00123.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8039	19	23

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]