PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS65022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | CPP | ||||||||
Protein Properties | Length: 386aa MW: 42589.9 Da PI: 8.1332 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 44.4 | 3.4e-14 | 96 | 133 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +kk+CnCk+s+Clk+YCeCfa++++C+ C+C +C+Nk EPS65022.1 96 RKKHCNCKNSRCLKLYCECFASQTYCDG-CNCMNCHNKL 133 689*************************.********96 PP | |||||||
2 | TCR | 50.1 | 5.3e-16 | 172 | 211 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +++kgC+Ckks ClkkYCeC++a+ Cse+C+C dCkN e EPS65022.1 172 QHNKGCHCKKSTCLKKYCECYQANILCSEKCRCLDCKNYE 211 589***********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.5E-16 | 95 | 135 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.424 | 96 | 212 | IPR005172 | CRC domain |
Pfam | PF03638 | 7.5E-11 | 97 | 132 | IPR005172 | CRC domain |
SMART | SM01114 | 7.8E-19 | 172 | 213 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 7.5E-12 | 175 | 210 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MEQSESTAGT LAASPVVRQL DFTGNSANQN GNSILLEHPQ AQLESSLRAL AQANQAHVSA 60 GSRSPPPRFP AQTKTRESPE SQKTNNLEKN DLTPKRKKHC NCKNSRCLKL YCECFASQTY 120 CDGCNCMNCH NKLEFDVHRK EAMAAILERR PDAFRPKIAS SPIGASDRAV EQHNKGCHCK 180 KSTCLKKYCE CYQANILCSE KCRCLDCKNY EGSEERKTHF LHHRPSHSLS SILQPKPVNQ 240 NGFPASNPSV SVLPKCSYRS PLTGILREEH IKDFCNSLVE ASVRSATKNL SDSLFFMSGA 300 EGKERNTTTT TATPCFPLSP VTLSLMCDEH DDGALAEDDP GARRPSGKVD SAPGNDVGIE 360 QERRVLSKFC GFLSDLITRG YVRGNE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-30 | 97 | 218 | 11 | 129 | Protein lin-54 homolog |
5fd3_B | 2e-30 | 97 | 218 | 11 | 129 | Protein lin-54 homolog |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858010.1 | 1e-108 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
TrEMBL | S8DYH8 | 0.0 | S8DYH8_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.A00224.1.p | 1e-107 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA19332 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25790.1 | 7e-74 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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