PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64949.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 601aa    MW: 67957.3 Da    PI: 7.1848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64949.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3795.8e-1162295992374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL+ cA+ v+sgd++ a++lL++++++a+p+gd mqRla+yf ++L+ar+a+s++++yk+l   + s    s+ l+a++++  ++P+ k+s++  N+
  EPS64949.1 229 NTLLTLCAQSVASGDNKTADELLNQIRQHAAPSGDGMQRLAHYFSNGLEARMAGSGTQIYKSLLNLPIS---ASDILKAYHIYLATCPFRKLSNFFSNK 324
                 57999**********************************************************999998...89************************* PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +I++  e+ +r+Hi+D++i +G+QWp++lq L+sR++gpp+lRiTg++ p +g   +e++eetg+rLa++A++++vpfef++ +a+++e++++e+++++
  EPS64949.1 325 TIMNLSERVDRLHIVDLGILYGFQWPSFLQRLSSRAGGPPKLRITGIDLPCPGfrPAERVEETGKRLARYAKAFKVPFEFHA-IAQKWETIRVEDIKIE 422
                 **************************************************99999***************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E l+Vn+v++  +lldesv  + +rd+vL+l+++++P v+++   +  +n++ F  rf eal +ys++fd+l+a++pre +er+ +E+ ++g+e++n
  EPS64949.1 423 EDELLVVNCVYRFRNLLDESVVANCPRDRVLNLIREMNPSVLIMGILNGAYNAPFFISRFREALFHYSSVFDMLDANIPREVHERMLLEKTIFGQEAMN 521
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v+acegaer+er et+++W+ r ++aGF+ v+l+ ++++ ak  +   + + + v e+  ++++gWk+r L  +S+Wr
  EPS64949.1 522 VIACEGAERIERPETYKQWQVRSRRAGFEMVALDRDIMQMAKKRVGSLYHKDFVVAEDGRWMLQGWKGRILCGLSCWR 599
                 *************************************************888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.535202579IPR005202Transcription factor GRAS
PfamPF035142.0E-113229599IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
PEDCDFSDEV LKYINHILME EDVEEKTCMF QESAALLAAE KSLYEVIGQP YQDPSIGNGK  60
FFADSESLHD EYLVSPSSSV AVMDIRDGNR NAYCGNRKFI LESSVTASSG DHVTVIDLTL  120
DSPLSTPMND GKKGSIDSSR GKKNQHYDSS GSEYERSRKQ SAIYHESSIS PDMFDEVLLC  180
SADRNESAIR QELNSASKTG PKNVHSKDSS NVKNLGHRKK KKKNLVDLNT LLTLCAQSVA  240
SGDNKTADEL LNQIRQHAAP SGDGMQRLAH YFSNGLEARM AGSGTQIYKS LLNLPISASD  300
ILKAYHIYLA TCPFRKLSNF FSNKTIMNLS ERVDRLHIVD LGILYGFQWP SFLQRLSSRA  360
GGPPKLRITG IDLPCPGFRP AERVEETGKR LARYAKAFKV PFEFHAIAQK WETIRVEDIK  420
IEEDELLVVN CVYRFRNLLD ESVVANCPRD RVLNLIREMN PSVLIMGILN GAYNAPFFIS  480
RFREALFHYS SVFDMLDANI PREVHERMLL EKTIFGQEAM NVIACEGAER IERPETYKQW  540
QVRSRRAGFE MVALDRDIMQ MAKKRVGSLY HKDFVVAEDG RWMLQGWKGR ILCGLSCWRP  600
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5023560026380Protein SCARECROW
5b3h_A3e-5023560025379Protein SCARECROW
5b3h_D3e-5023560025379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858558.10.0PREDICTED: scarecrow-like protein 14
TrEMBLS8CDC10.0S8CDC1_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.F00778.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]