PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS64949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GRAS | ||||||||
Protein Properties | Length: 601aa MW: 67957.3 Da PI: 7.1848 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 379 | 5.8e-116 | 229 | 599 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL+ cA+ v+sgd++ a++lL++++++a+p+gd mqRla+yf ++L+ar+a+s++++yk+l + s s+ l+a++++ ++P+ k+s++ N+ EPS64949.1 229 NTLLTLCAQSVASGDNKTADELLNQIRQHAAPSGDGMQRLAHYFSNGLEARMAGSGTQIYKSLLNLPIS---ASDILKAYHIYLATCPFRKLSNFFSNK 324 57999**********************************************************999998...89************************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +I++ e+ +r+Hi+D++i +G+QWp++lq L+sR++gpp+lRiTg++ p +g +e++eetg+rLa++A++++vpfef++ +a+++e++++e+++++ EPS64949.1 325 TIMNLSERVDRLHIVDLGILYGFQWPSFLQRLSSRAGGPPKLRITGIDLPCPGfrPAERVEETGKRLARYAKAFKVPFEFHA-IAQKWETIRVEDIKIE 422 **************************************************99999***************************.7*************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++E l+Vn+v++ +lldesv + +rd+vL+l+++++P v+++ + +n++ F rf eal +ys++fd+l+a++pre +er+ +E+ ++g+e++n EPS64949.1 423 EDELLVVNCVYRFRNLLDESVVANCPRDRVLNLIREMNPSVLIMGILNGAYNAPFFISRFREALFHYSSVFDMLDANIPREVHERMLLEKTIFGQEAMN 521 *************************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+acegaer+er et+++W+ r ++aGF+ v+l+ ++++ ak + + + + v e+ ++++gWk+r L +S+Wr EPS64949.1 522 VIACEGAERIERPETYKQWQVRSRRAGFEMVALDRDIMQMAKKRVGSLYHKDFVVAEDGRWMLQGWKGRILCGLSCWR 599 *************************************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.535 | 202 | 579 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-113 | 229 | 599 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 601 aa Download sequence Send to blast |
PEDCDFSDEV LKYINHILME EDVEEKTCMF QESAALLAAE KSLYEVIGQP YQDPSIGNGK 60 FFADSESLHD EYLVSPSSSV AVMDIRDGNR NAYCGNRKFI LESSVTASSG DHVTVIDLTL 120 DSPLSTPMND GKKGSIDSSR GKKNQHYDSS GSEYERSRKQ SAIYHESSIS PDMFDEVLLC 180 SADRNESAIR QELNSASKTG PKNVHSKDSS NVKNLGHRKK KKKNLVDLNT LLTLCAQSVA 240 SGDNKTADEL LNQIRQHAAP SGDGMQRLAH YFSNGLEARM AGSGTQIYKS LLNLPISASD 300 ILKAYHIYLA TCPFRKLSNF FSNKTIMNLS ERVDRLHIVD LGILYGFQWP SFLQRLSSRA 360 GGPPKLRITG IDLPCPGFRP AERVEETGKR LARYAKAFKV PFEFHAIAQK WETIRVEDIK 420 IEEDELLVVN CVYRFRNLLD ESVVANCPRD RVLNLIREMN PSVLIMGILN GAYNAPFFIS 480 RFREALFHYS SVFDMLDANI PREVHERMLL EKTIFGQEAM NVIACEGAER IERPETYKQW 540 QVRSRRAGFE MVALDRDIMQ MAKKRVGSLY HKDFVVAEDG RWMLQGWKGR ILCGLSCWRP 600 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-50 | 235 | 600 | 26 | 380 | Protein SCARECROW |
5b3h_A | 3e-50 | 235 | 600 | 25 | 379 | Protein SCARECROW |
5b3h_D | 3e-50 | 235 | 600 | 25 | 379 | Protein SCARECROW |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858558.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
TrEMBL | S8CDC1 | 0.0 | S8CDC1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.F00778.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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