PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS64783.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | TCP | ||||||||
Protein Properties | Length: 140aa MW: 16240.5 Da PI: 10.5142 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 153.5 | 1.3e-47 | 1 | 125 | 4 | 135 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqk 102 kkdrhski+T++g+RdRRvRls+ +a++fFdLq++LG+dk+skt++WLl+++k aikel++ ++++ +s +s+++ g+++ +++++++s+k EPS64783.1 1 KKDRHSKIYTSQGPRDRRVRLSIGIARKFFDLQEMLGVDKPSKTLDWLLTKSKSAIKELVQKKQKKG-------ESRPDSKEGGGEEEDEEEEEEESRK 92 8*************************************************************66666.......2222222333344555556666666 PP TCP 103 saasalnlakesrakarararertrekmriknk 135 ++ +++ +akesrakarararertrekm+ikn EPS64783.1 93 KKCTNNTIAKESRAKARARARERTREKMCIKNM 125 6666799999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 36.269 | 1 | 59 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.9E-36 | 1 | 121 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 12.483 | 102 | 119 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
KKDRHSKIYT SQGPRDRRVR LSIGIARKFF DLQEMLGVDK PSKTLDWLLT KSKSAIKELV 60 QKKQKKGESR PDSKEGGGEE EDEEEEEEES RKKKCTNNTI AKESRAKARA RARERTREKM 120 CIKNMNVASG INQLQFLQLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-14 | 6 | 59 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-14 | 6 | 59 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269|PubMed:16236768, ECO:0000269|PubMed:8893002}. | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554786.1 | 4e-36 | transcription factor CYCLOIDEA | ||||
Swissprot | O49250 | 1e-40 | CYCLD_ANTMA; Transcription factor CYCLOIDEA | ||||
Swissprot | Q9SBV6 | 8e-41 | CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment) | ||||
TrEMBL | S8DP26 | 2e-96 | S8DP26_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.K00858.1.p | 7e-35 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4333 | 22 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 3e-29 | TCP family protein |