PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS64590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | NF-YC | ||||||||
Protein Properties | Length: 113aa MW: 13349.2 Da PI: 7.6065 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 30.1 | 1.1e-09 | 24 | 106 | 16 | 98 |
NF-YC 16 fknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++P+ r+k i+k + +is ea l+ +a e f+ ++ ++ a +++ + ++++vt+ + f fl d vp+ EPS64590.1 24 SVLYRFPMNRVKSIIKEEIPDLRISPEAVFLINRASEKFLQLFSKEAYACAFLDRKNHISYHHLSSIVTKRKRFSFLSDFVPE 106 555689***********987788****************999999************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.5E-10 | 28 | 89 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.0E-18 | 29 | 106 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.97E-14 | 46 | 107 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
KKIRVEDDND DEEGDEPEKK KRDSVLYRFP MNRVKSIIKE EIPDLRISPE AVFLINRASE 60 KFLQLFSKEA YACAFLDRKN HISYHHLSSI VTKRKRFSFL SDFVPEMLKA EDA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089889.1 | 1e-44 | protein MNN4 isoform X1 | ||||
TrEMBL | S8CCF6 | 3e-75 | S8CCF6_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009800538.1 | 3e-34 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9304 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 4e-24 | nuclear factor Y, subunit C10 |
Publications ? help Back to Top | |||
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