PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS64534.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 30816.4 Da PI: 5.02 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6.1e-19 | 101 | 146 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g WT+eEd llv++v+++G + W+ Ia+++ gR +kqc++rw+++l EPS64534.1 101 GQWTPEEDRLLVKLVEEHGIRKWSQIAQMLE-GRIGKQCRERWHNHL 146 78*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 152 | 194 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eEd +l++ +k+lG++ W+ I+++++ gRt++++k++w+ EPS64534.1 152 KDNWTEEEDRILIRSHKELGNK-WAEISKRLP-GRTENSIKNHWN 194 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.343 | 90 | 146 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-16 | 99 | 148 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.95E-32 | 100 | 193 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-30 | 101 | 154 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 6.0E-20 | 103 | 160 | No hit | No description |
CDD | cd00167 | 1.13E-15 | 103 | 146 | No hit | No description |
PROSITE profile | PS51294 | 27.316 | 147 | 201 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-17 | 151 | 199 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-13 | 154 | 197 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 155 | 201 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence Send to blast |
MEFYNNDENA PPPYIKTPTD DDDGDCCYFM DPRWIQFQSS LDPLFFDDCF VADFHDDPLA 60 EFVIPPPDET SSSSAAAAAI APPVKKQAEK RGRRKGKSGN GQWTPEEDRL LVKLVEEHGI 120 RKWSQIAQML EGRIGKQCRE RWHNHLRPDI KKDNWTEEED RILIRSHKEL GNKWAEISKR 180 LPGRTENSIK NHWNATKRRQ LSRRKCRTKF SRPDSILQNY ITSLNGTAEG AADSDASAAL 240 EYDYAEDMEM DLAPLMMDNA VDFFFDI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-45 | 101 | 201 | 5 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-45 | 101 | 201 | 5 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-45 | 101 | 201 | 5 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027169364.1 | 3e-76 | transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 5e-68 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | S8CC50 | 0.0 | S8CC50_9LAMI; Uncharacterized protein | ||||
STRING | PGSC0003DMT400087324 | 2e-74 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3150 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18770.1 | 9e-69 | myb domain protein 98 |
Publications ? help Back to Top | |||
---|---|---|---|
|