PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS64468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C3H | ||||||||
Protein Properties | Length: 84aa MW: 9827.05 Da PI: 9.4808 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.6 | 1.3e-10 | 61 | 83 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++f rtG C yGd+Ck+ H++ EPS64468.1 61 ICNRFVRTGSCVYGDSCKYYHPQ 83 7********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 5.1E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 7.31E-16 | 4 | 47 | No hit | No description |
Pfam | PF06220 | 4.3E-12 | 5 | 38 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 13.723 | 56 | 84 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-4 | 58 | 83 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-7 | 59 | 83 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 61 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-6 | 61 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MPLGKYYCDY CDKQFQDTPS ARRRHLEGVA HQRAKALWYD AARNSHWTNQ VPDPRSLGKG 60 ICNRFVRTGS CVYGDSCKYY HPQR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012859022.1 | 2e-43 | PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2 | ||||
Swissprot | Q0JP11 | 3e-30 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | S8DN91 | 3e-57 | S8DN91_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.B00859.1.p | 1e-42 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12008 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 7e-29 | C3H family protein |
Publications ? help Back to Top | |||
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