PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64349.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB
Protein Properties Length: 201aa    MW: 22925.7 Da    PI: 11.4212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64349.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
       EPS64349.1 15 KGPWTKEEDQKLLAYIREHGHGRWRSLPAKAGLQRCGKSCRLRWTNYL 62
                     79********************************************97 PP

2Myb_DNA-binding50.35.4e-1668111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w++
       EPS64349.1  68 RGKFSMQEEKAIIRLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNT 111
                      89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-24965IPR009057Homeodomain-like
PROSITE profilePS5129424.711066IPR017930Myb domain
SuperFamilySSF466894.31E-3013109IPR009057Homeodomain-like
SMARTSM007171.5E-141464IPR001005SANT/Myb domain
PfamPF002492.4E-161562IPR001005SANT/Myb domain
CDDcd001675.53E-111762No hitNo description
Gene3DG3DSA:1.10.10.608.0E-2666117IPR009057Homeodomain-like
SMARTSM007174.9E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129419.17167117IPR017930Myb domain
PfamPF002492.5E-1568111IPR001005SANT/Myb domain
CDDcd001671.26E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGNQSNGQEK TALKKGPWTK EEDQKLLAYI REHGHGRWRS LPAKAGLQRC GKSCRLRWTN  60
YLRPDIKRGK FSMQEEKAII RLHALLGNRW SAIAAHLPKR TDNEIKNYWN TRLKKRLTRM  120
GIDPATHKPK ASPIGSGQSR QVAAVSHMAQ WETARLEAEA RLVRESKLLS RIQLLRRNSA  180
SPMMPAAAPP PPCLDVLKVW Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071274.11e-109transcription factor MYB28-like isoform X2
SwissprotQ9LE635e-93MY106_ARATH; Transcription factor MYB106
TrEMBLS8CBS11e-145S8CBS1_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_010108699.11e-100(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-93myb domain protein 106
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]