PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS64070.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26056.3 Da    PI: 6.7945
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS64070.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.6e-2174127457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 + ++t+eqle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k+
  EPS64070.1  74 KKRLTTEQLESLENSFQEDVKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKN 127
                 5569************************************************95 PP

2HD-ZIP_I/II124.16.6e-4073163292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rl++eq+++LE+sF+e+ kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yda+++e+++L++ev +Lr+ lk
   EPS64070.1  73 KKKRLTTEQLESLENSFQEDVKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKNKQLESLYDALKQEYDAVSREKHKLQQEVMALRAILK 163
                  9**************************************************************************************8776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.27E-2154130IPR009057Homeodomain-like
PROSITE profilePS5007117.5468128IPR001356Homeobox domain
SMARTSM003892.3E-2071132IPR001356Homeobox domain
CDDcd000861.33E-1973129No hitNo description
PfamPF000463.6E-1873127IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-2275135IPR009057Homeodomain-like
PRINTSPR000316.8E-699108IPR000047Helix-turn-helix motif
PROSITE patternPS000270103126IPR017970Homeobox, conserved site
PRINTSPR000316.8E-6108124IPR000047Helix-turn-helix motif
PfamPF021831.1E-7128162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDWNGNGSGE CYRLPSFVSR PESSFGFLYN YTTSHDQFSA NGLEMKQPSI STGQMLPSLM  60
GKGCMGIYGQ DPKKKRLTTE QLESLENSFQ EDVKLDPDRK MKLAKELGLQ PRQIAVWFQN  120
RRARWKNKQL ESLYDALKQE YDAVSREKHK LQQEVMALRA ILKDHVTKKQ ISTGGGGGYT  180
DVSGEETVES TSIPSSDVPP RVANQMSEWV NVEDYSNPVM MTPYNWGPLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120128RRARWKNKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.11e-101putative homeobox-leucine zipper protein ATHB-51
TrEMBLS8CB321e-172S8CB32_9LAMI; Uncharacterized protein
STRINGMigut.J00491.1.p4e-94(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.15e-50homeobox 51
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]