PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63628.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SBP

Protein Properties

Length: 940aa MW: 104145 Da PI: 6.1125

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63628.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.4	1.3e-40	142	219	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adl+++k+y+rrhkvC+vhsk++++lv g+ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ EPS63628.1 142 ACQVEDCKADLTNTKDYYRRHKVCDVHSKSANALVGGILQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKAHP 219 5**************************************************************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-32	135	204	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.556	140	217	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.88E-37	142	221	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.0E-30	143	216	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	2.8E-7	712	847	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	8.39E-9	745	847	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.29E-8	752	868	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
NFYDPVVSDL NGLGKRSAEW DVNDWRWDGD FFRAVPLNAV PSDCRSRQFF PEIPLRSGLQ 60 NTFSLVPIDE GVLKDEREKR DSEKRRRYID VNEEDNEETG SSLNLKLGVQ ALAVIDSDGD 120 KAENSAKKCK VSGAQSSSSR AACQVEDCKA DLTNTKDYYR RHKVCDVHSK SANALVGGIL 180 QRFCQQCSRF HVLEEFDEGK RSCRRRLAGH NKRRRKAHPE SAVGSNVIND EHGNNDLLIT 240 LLRLLSNIQT SGSDQPKDQD LLSNLLKNLA NLASSSNATN PRGSLPVSPD LHKAGASFET 300 DGKGTMSPGG SSPALPSTSL TQKSAHTENA LAGPGLDASP SCVSSPATRP DASMGRERMN 360 NIDLNSAYDD SEDLMDNVPD ILGNASPSSF KDSQRSSPPQ LSGNSGSTQS QSPSTLSGEV 420 QIRTDRIVLK LFGKDPSDFP LTLRKQIFDW LSSSPTDIES YIRPGCVILT IYTCMDKENW 480 AELHCNLNSS LRRLIDSSAD PFWRTGWIYT RVQHQASFVY NGQVVTDMPI PMATHRSCRI 540 SSIAPLAVSF SEEVHFTVKG VNLAGTTSRV LCALEGRYLL QENCDDVVRD DCFSDCEEIQ 600 CLEFSCSVPN VVGRGFIEVE DYCINSSFFP FIVAEKEVCS EICKLEAVIE DAADSEHLDT 660 YKTEARNRAL EFVNEMGWLL HKNNLMLRWG ETRGEDVVDL FPFIRFKYLM DFAIDRDWPS 720 VVRKLLKVVF DGSVEAGQYT SPVAALLDIG VLHRAVRKNS RPMVEFLLSY RSPDCGKFLF 780 RPDGSGPGGL TPLHIAAGLD GCDDVVDALT EDPELVGIGA WKNCRDSAGF SPQDYASLRG 840 HYSYIHLVQR KLNKRSGQVV VDIPDKQKVL GGAMQVEKNV KSCSECARKM HWSYGRARSS 900 VAIFRPAMVS MVAIAAVCVC AALLWRTLPG IFHSWDQLKY

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

NFYDPVVSDL NGLGKRSAEW DVNDWRWDGD FFRAVPLNAV PSDCRSRQFF PEIPLRSGLQ  60
NTFSLVPIDE GVLKDEREKR DSEKRRRYID VNEEDNEETG SSLNLKLGVQ ALAVIDSDGD  120
KAENSAKKCK VSGAQSSSSR AACQVEDCKA DLTNTKDYYR RHKVCDVHSK SANALVGGIL  180
QRFCQQCSRF HVLEEFDEGK RSCRRRLAGH NKRRRKAHPE SAVGSNVIND EHGNNDLLIT  240
LLRLLSNIQT SGSDQPKDQD LLSNLLKNLA NLASSSNATN PRGSLPVSPD LHKAGASFET  300
DGKGTMSPGG SSPALPSTSL TQKSAHTENA LAGPGLDASP SCVSSPATRP DASMGRERMN  360
NIDLNSAYDD SEDLMDNVPD ILGNASPSSF KDSQRSSPPQ LSGNSGSTQS QSPSTLSGEV  420
QIRTDRIVLK LFGKDPSDFP LTLRKQIFDW LSSSPTDIES YIRPGCVILT IYTCMDKENW  480
AELHCNLNSS LRRLIDSSAD PFWRTGWIYT RVQHQASFVY NGQVVTDMPI PMATHRSCRI  540
SSIAPLAVSF SEEVHFTVKG VNLAGTTSRV LCALEGRYLL QENCDDVVRD DCFSDCEEIQ  600
CLEFSCSVPN VVGRGFIEVE DYCINSSFFP FIVAEKEVCS EICKLEAVIE DAADSEHLDT  660
YKTEARNRAL EFVNEMGWLL HKNNLMLRWG ETRGEDVVDL FPFIRFKYLM DFAIDRDWPS  720
VVRKLLKVVF DGSVEAGQYT SPVAALLDIG VLHRAVRKNS RPMVEFLLSY RSPDCGKFLF  780
RPDGSGPGGL TPLHIAAGLD GCDDVVDALT EDPELVGIGA WKNCRDSAGF SPQDYASLRG  840
HYSYIHLVQR KLNKRSGQVV VDIPDKQKVL GGAMQVEKNV KSCSECARKM HWSYGRARSS  900
VAIFRPAMVS MVAIAAVCVC AALLWRTLPG IFHSWDQLKY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-30	133	216	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	82	87	EKRRRY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020547976.1	0.0	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
TrEMBL	S8DL94	0.0	S8DL94_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_004297083.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]