PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS63497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 210aa MW: 23300 Da PI: 9.6546 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 99 | 3.5e-31 | 38 | 94 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +rY+eClkNhAas+G+h+vDGC+Efmps g egta lkCaAC+CHRnFHR+eve e EPS63497.1 38 VARYRECLKNHAASMGAHVVDGCCEFMPS-GGEGTAGELKCAACDCHRNFHRKEVEGE 94 579*************************9.8899********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.7E-29 | 39 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.3E-27 | 40 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-20 | 40 | 94 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.257 | 41 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.59E-18 | 141 | 207 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-28 | 142 | 208 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.2E-24 | 150 | 206 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
GGVGNPPPPP PPPAAAAVAV PRGSSSSNHP NAAAGSPVAR YRECLKNHAA SMGAHVVDGC 60 CEFMPSGGEG TAGELKCAAC DCHRNFHRKE VEGENPRPSA SYRPPFLGHH HHHQRHQHRP 120 ARPHNSGAAE SSSEDLHMFE SGHADNPSSK KRFRTKFSQE QKDQMQEFAE KLGWRMQKQD 180 EHQVQQFCER SGVKKQVFKV WMHNNKRLKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-22 | 149 | 206 | 16 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012469414.1 | 2e-67 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
Refseq | XP_021907866.1 | 2e-66 | zinc-finger homeodomain protein 6-like, partial | ||||
Refseq | XP_022740152.1 | 3e-66 | zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9FRL5 | 8e-54 | ZHD5_ARATH; Zinc-finger homeodomain protein 5 | ||||
TrEMBL | S8DUD2 | 1e-153 | S8DUD2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | evm.model.supercontig_6.121 | 1e-66 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-53 | homeobox protein 22 |
Publications ? help Back to Top | |||
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