PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS63403.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 307aa MW: 34443.5 Da PI: 5.0879

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS63403.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.8	1.1e-16	26	116	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++ + +L+++ ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ l+k+yk +k+ + + + s++p+f++l+ EPS63403.1 26 CWTEEATATLVDVWGRRYMELNRGNLRQKDWQEVADVVnsrhgHTKKTRRTDVQCKNRIDTLKKKYKTEKAKIVDSNGAAASSWPFFSRLD 116 8************************************9988888999*******************9999999999****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.1E-26	24	117	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGDLTGSGSG SAQASRSRQV PFREDCWTEE ATATLVDVWG RRYMELNRGN LRQKDWQEVA 60 DVVNSRHGHT KKTRRTDVQC KNRIDTLKKK YKTEKAKIVD SNGAAASSWP FFSRLDFLIG 120 SNLSKLQNSK ATPPPTASPL LPSQQGIIPM SLPSPPMAVP INYRKPLPSA VATPMVLPQK 180 RSLQFPSTDE SFLRRNNYSV MAAAAAAAAD DDGDGDGDSD GEDADESPEE EEEEEEEESR 240 DDGLRRLAKA VESLGEIYER VESLKQRQIM EMEKERMQIA NELEAQRISY FTDFQVRLEK 300 IKQAKRS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00413	DAP	Transfer from AT3G58630	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011101388.1	1e-119	trihelix transcription factor ASIL1 isoform X3
TrEMBL	S8DKP7	0.0	S8DKP7_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.M01037.1.p	1e-105	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	2e-50	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]