PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63334.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 217aa    MW: 24268.4 Da    PI: 8.8744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63334.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1894144255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +++GVr+++ +g+++AeIrdp   + k  r++lg+f+ aeeAa+ +++a+ +l+g
  EPS63334.1  94 HFRGVRRRP-WGKFAAEIRDP---NrKGIRVWLGTFDKAEEAARSYDRAAFRLRG 144
                 69*******.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.05E-3093152No hitNo description
SMARTSM003801.7E-3794158IPR001471AP2/ERF domain
PROSITE profilePS5103224.15794152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3194153IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2294154IPR016177DNA-binding domain
PfamPF008478.0E-1394144IPR001471AP2/ERF domain
PRINTSPR003671.7E-1295106IPR001471AP2/ERF domain
PRINTSPR003671.7E-12134154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
SALEMIRHHL LVDDSSSAFM PADCFSLSAE SSNSSSTNSS VSIMDFSSNH LLEFETKPKF  60
QVEENKPKRK KPCCLHVAIP KTATKKGADA EFQHFRGVRR RPWGKFAAEI RDPNRKGIRV  120
WLGTFDKAEE AARSYDRAAF RLRGSKAILN FPLEIGNSDA PQEDAGRKRE TAMKKVFKTE  180
DGSSSEEVPL PLTPSIWTDI WDGSNVRGIF EIPPLSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2990159170ATERF1
3gcc_A1e-2990159170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101098.12e-56ethylene-responsive transcription factor 5
SwissprotQ404781e-53ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLS8C8Y11e-158S8C8Y1_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009776184.12e-52(Nicotiana sylvestris)
STRINGPGSC0003DMT4000904757e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-47ERF family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]