PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63297.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 205aa    MW: 22389.3 Da    PI: 10.1127
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63297.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-20106156256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +++GVr+++ +g+W+AeIrdp +   r r +lg+++taeeAa  +++a+ kl+g+
  EPS63297.1 106 KFRGVRQRP-WGKWAAEIRDPLK---RVRLWLGTYDTAEEAAMVYDNAAIKLRGP 156
                 89*******.**********754...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-30105163IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22106163IPR016177DNA-binding domain
PfamPF008479.9E-13106155IPR001471AP2/ERF domain
CDDcd000185.27E-31106164No hitNo description
SMARTSM003801.3E-38106169IPR001471AP2/ERF domain
PROSITE profilePS5103223.709106163IPR001471AP2/ERF domain
PRINTSPR003671.6E-10107118IPR001471AP2/ERF domain
PRINTSPR003671.6E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
LWPVKFTEHR EVTEMVSRRK RRSFPTRRVV RFCVTDADAT DSSGDEGDAV LVLPRRRVRK  60
FVNEVRIQAE CGGEDGPAVT GRKWKGKSKG CCETAAAAAA FGGGRKFRGV RQRPWGKWAA  120
EIRDPLKRVR LWLGTYDTAE EAAMVYDNAA IKLRGPNALT NFAAPPGQAK EFPVSDCDSV  180
DGSTGGLSSP TSVFLFVAGN SSDHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-21104162362ATERF1
3gcc_A9e-21104162362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021974287.12e-60ethylene-responsive transcription factor CRF4-like
TrEMBLS8DTZ51e-147S8DTZ5_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_008439327.12e-58(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-47cytokinin response factor 4
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]