PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS62935.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 27834 Da PI: 10.1227 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.2e-12 | 76 | 118 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L EPS62935.1 76 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 118 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.866 | 69 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-17 | 72 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 75 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-14 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.11E-13 | 76 | 122 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.4E-16 | 76 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 1.72E-5 | 180 | 241 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGSLNLYPDD NSLIQFPTGF HPFGAGNPPT LFQKRAALRK KKKKKKNKNS SEGDNSDDQL 60 DSKGKSKKGM PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIDYLKELLQ 120 KIDDLSNELE SPAPGSSGAD FYPPACPVPS KIKQELISSP NGQQPTRVEV RLGEGRGVNI 180 QMFCGRRPGL LLSTLRAMDG MGLEVQQAVI SCFNSFVLDV FRAELCGDRR EDLSPEQIKA 240 VLLDSAGFHG AV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 7e-14 | 71 | 122 | 6 | 57 | Transcription factor MYC2 |
5gnj_B | 7e-14 | 71 | 122 | 6 | 57 | Transcription factor MYC2 |
5gnj_E | 7e-14 | 71 | 122 | 6 | 57 | Transcription factor MYC2 |
5gnj_F | 7e-14 | 71 | 122 | 6 | 57 | Transcription factor MYC2 |
5gnj_G | 7e-14 | 71 | 122 | 6 | 57 | Transcription factor MYC2 |
5gnj_I | 7e-14 | 71 | 122 | 6 | 57 | Transcription factor MYC2 |
5gnj_M | 7e-14 | 71 | 122 | 6 | 57 | Transcription factor MYC2 |
5gnj_N | 7e-14 | 71 | 122 | 6 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 45 | KKKKKKK |
2 | 77 | 84 | ERRRRKKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002889974.1 | 1e-89 | transcription factor SCREAM2 | ||||
Refseq | XP_011073188.1 | 3e-89 | transcription factor ICE1 | ||||
Refseq | XP_013461649.1 | 2e-89 | transcription factor ICE1 isoform X1 | ||||
Swissprot | Q9LPW3 | 1e-86 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | S8C847 | 0.0 | S8C847_9LAMI; Uncharacterized protein | ||||
STRING | Al_scaffold_0001_1326 | 4e-89 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12860.1 | 6e-87 | bHLH family protein |