PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62805.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 715aa MW: 81723.7 Da PI: 6.6875

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62805.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.7	6.4e-31	82	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn YA++vGFs+r+s+s++s+r+g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka+l vk +++gkw+v+ +++eHnHel+p EPS62805.1 82 FYNLYARRVGFSTRVSSSRRSRRDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKASLSVKIQDSGKWMVSGFVKEHNHELVP 173 9*************************************998888545677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-29	82	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-30	294	386	IPR018289	MULE transposase domain
Pfam	PF04434	1.3E-10	563	610	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.423	579	611	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.7E-8	586	613	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
MENGVIEFDI GVGGADDRIE IEACNDHEEE EERDASTSDA YSHGSGSGEN NFDMRIYIPE 60 GDIELEPNVG MEFESEEAAK AFYNLYARRV GFSTRVSSSR RSRRDGAIIQ RSFVCAKEGF 120 RNLNEKRTKD REIKRPRTVT RVGCKASLSV KIQDSGKWMV SGFVKEHNHE LVPPDQVHRL 180 RSHRQISGPA KTLIDTLQAA GMGPRRIMSV LIKEYGGISK VGFTEVDCRN YMRNSKHRST 240 EGDTQLLLDY LKQKQAQNPS FFYDVQWKEE QCTGNLFWAD LKARADYNHF GDTVTFDTTY 300 RSNRYRLPFA PFTGLNHHGQ PVLFGCAFLL NESEASFVWL FRTWLAAMSD RAPLSITTEH 360 DDVICSAVTQ VFPSTRHRFC KWHVYKQCQE KLSHVLLLNH PHFEAAFHQC VNSSETCEEF 420 ESCWDSLVDK YDLRDHGWFR ALYDDRRRWV PVYIRATFFA EISVTERSDG MNSYFDGYVN 480 ASTGLSQFFK LYEKALESRH EKEVKADLDT MNTPPVLKTP SPMEKQASEL YTRKIFTRFQ 540 EELVSTLTLT ASAVEDDGEI TTYRVANFGE DHRAHLVRFN VLEMKALCSC RMFEFSGLLC 600 RHVLAVFRVA NVLTLPPRYV SKRWTRNARS CVVLEEEQAA ADCSGGRRSY LESRTFRYNS 660 LRHEAFKLAD QGSESLETYS VAAAALAEAS AKVAEAIRNE GKDRLADEGS FRGSS

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

MENGVIEFDI GVGGADDRIE IEACNDHEEE EERDASTSDA YSHGSGSGEN NFDMRIYIPE  60
GDIELEPNVG MEFESEEAAK AFYNLYARRV GFSTRVSSSR RSRRDGAIIQ RSFVCAKEGF  120
RNLNEKRTKD REIKRPRTVT RVGCKASLSV KIQDSGKWMV SGFVKEHNHE LVPPDQVHRL  180
RSHRQISGPA KTLIDTLQAA GMGPRRIMSV LIKEYGGISK VGFTEVDCRN YMRNSKHRST  240
EGDTQLLLDY LKQKQAQNPS FFYDVQWKEE QCTGNLFWAD LKARADYNHF GDTVTFDTTY  300
RSNRYRLPFA PFTGLNHHGQ PVLFGCAFLL NESEASFVWL FRTWLAAMSD RAPLSITTEH  360
DDVICSAVTQ VFPSTRHRFC KWHVYKQCQE KLSHVLLLNH PHFEAAFHQC VNSSETCEEF  420
ESCWDSLVDK YDLRDHGWFR ALYDDRRRWV PVYIRATFFA EISVTERSDG MNSYFDGYVN  480
ASTGLSQFFK LYEKALESRH EKEVKADLDT MNTPPVLKTP SPMEKQASEL YTRKIFTRFQ  540
EELVSTLTLT ASAVEDDGEI TTYRVANFGE DHRAHLVRFN VLEMKALCSC RMFEFSGLLC  600
RHVLAVFRVA NVLTLPPRYV SKRWTRNARS CVVLEEEQAA ADCSGGRRSY LESRTFRYNS  660
LRHEAFKLAD QGSESLETYS VAAAALAEAS AKVAEAIRNE GKDRLADEGS FRGSS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552571.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552572.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020552573.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	S8C7P1	0.0	S8C7P1_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_004290092.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]