PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS62763.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | RAV | ||||||||
Protein Properties | Length: 293aa MW: 33386.7 Da PI: 8.669 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.9 | 6e-09 | 20 | 65 | 3 | 54 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 +kGV ++g W A+I+ + +r++lg+f ++ +Aa a++ a+ kl+ EPS62763.1 20 FKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEVDAAMAYDSAAIKLR 65 78885.556899****999......44**********99************98 PP | |||||||
2 | B3 | 86.9 | 1.7e-27 | 146 | 248 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ltpsdv+k++rlv+pk++a +h + e ++++l ++d++ W+++++y+k+s+++v+t+GW++Fvk++gL+e+D++ F+l EPS62763.1 146 FQKELTPSDVGKLNRLVIPKRYAVKHfptvpesdeqkqS---ErvgGEVQLEFYDREMCLWKFRYCYWKSSQSFVFTRGWNRFVKEKGLRENDTIAFYL 241 99**************************99988765442...15558899************************************************8 PP -SSSEE. CS B3 85 dgrsefe 91 ++++++ EPS62763.1 242 YESKDGQ 248 7665543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-16 | 19 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.647 | 19 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-18 | 19 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.85E-22 | 19 | 76 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-14 | 19 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-31 | 143 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-27 | 144 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.03E-24 | 145 | 252 | No hit | No description |
Pfam | PF02362 | 1.4E-24 | 146 | 248 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.661 | 146 | 259 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-20 | 146 | 256 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MEKGMLSMVS FAKRFRVDRF KGVVPQQNGH WGAQIYANHQ RIWLGTFKSE VDAAMAYDSA 60 AIKLRSGDSH RNFPWTNITI QEPKFQSLLT TDAVLNMIRD GSYPSKFADF LRSQQGETDV 120 GGAGGGGGLN LSSLCGDGNF FCTLLFQKEL TPSDVGKLNR LVIPKRYAVK HFPTVPESDE 180 QKQSERVGGE VQLEFYDREM CLWKFRYCYW KSSQSFVFTR GWNRFVKEKG LRENDTIAFY 240 LYESKDGQSF IVIDVAKKDE EQHEVVGCGS SGREEDSNKR KGIRLFGVQI YQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-29 | 145 | 251 | 13 | 112 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011086824.1 | 1e-146 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like | ||||
Swissprot | Q9C688 | 4e-97 | RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120 | ||||
TrEMBL | S8DIS2 | 0.0 | S8DIS2_9LAMI; Uncharacterized protein | ||||
STRING | VIT_11s0037g00010.t01 | 1e-118 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5252 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 2e-96 | RAV family protein |
Publications ? help Back to Top | |||
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