PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62763.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family RAV
Protein Properties Length: 293aa    MW: 33386.7 Da    PI: 8.669
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62763.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.96e-092065354
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                +kGV    ++g W A+I+       + +r++lg+f ++ +Aa a++ a+ kl+
  EPS62763.1 20 FKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEVDAAMAYDSAAIKLR 65
                78885.556899****999......44**********99************98 PP

2B386.91.7e-27146248191
                 EEEE-..-HHHHTT-EE--HHH.HTT............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+k+ltpsdv+k++rlv+pk++a +h            +   e   ++++l ++d++   W+++++y+k+s+++v+t+GW++Fvk++gL+e+D++ F+l
  EPS62763.1 146 FQKELTPSDVGKLNRLVIPKRYAVKHfptvpesdeqkqS---ErvgGEVQLEFYDREMCLWKFRYCYWKSSQSFVFTRGWNRFVKEKGLRENDTIAFYL 241
                 99**************************99988765442...15558899************************************************8 PP

                 -SSSEE. CS
          B3  85 dgrsefe 91 
                  ++++++
  EPS62763.1 242 YESKDGQ 248
                 7665543 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-161974IPR001471AP2/ERF domain
PROSITE profilePS5103216.6471974IPR001471AP2/ERF domain
SMARTSM003803.2E-181980IPR001471AP2/ERF domain
CDDcd000185.85E-221976No hitNo description
SuperFamilySSF541711.57E-141975IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.101.2E-31143261IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-27144248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-24145252No hitNo description
PfamPF023621.4E-24146248IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661146259IPR003340B3 DNA binding domain
SMARTSM010194.2E-20146256IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEKGMLSMVS FAKRFRVDRF KGVVPQQNGH WGAQIYANHQ RIWLGTFKSE VDAAMAYDSA  60
AIKLRSGDSH RNFPWTNITI QEPKFQSLLT TDAVLNMIRD GSYPSKFADF LRSQQGETDV  120
GGAGGGGGLN LSSLCGDGNF FCTLLFQKEL TPSDVGKLNR LVIPKRYAVK HFPTVPESDE  180
QKQSERVGGE VQLEFYDREM CLWKFRYCYW KSSQSFVFTR GWNRFVKEKG LRENDTIAFY  240
LYESKDGQSF IVIDVAKKDE EQHEVVGCGS SGREEDSNKR KGIRLFGVQI YQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2914525113112DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086824.11e-146AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6884e-97RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLS8DIS20.0S8DIS2_9LAMI; Uncharacterized protein
STRINGVIT_11s0037g00010.t011e-118(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-96RAV family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]