PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS62731.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 91aa MW: 10721.2 Da PI: 10.7228 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.3 | 1.8e-15 | 9 | 58 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++++ Lr+++P++ ++K + a+ L ++++Y++sLq EPS62731.1 9 RSKHSVTEQRRRSKINERYQILRRIIPHS----DQKRDTASFLLEVIHYVQSLQ 58 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.8E-20 | 6 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-17 | 6 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.085 | 7 | 57 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.9E-13 | 9 | 58 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.17E-12 | 9 | 62 | No hit | No description |
SMART | SM00353 | 4.3E-10 | 13 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 91 aa Download sequence Send to blast |
GKANANATRS KHSVTEQRRR SKINERYQIL RRIIPHSDQK RDTASFLLEV IHYVQSLQEK 60 VQKYEGGSYQ TWSLEPAKLM PWVKTHWNLA S |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002312362.2 | 3e-43 | transcription factor BIM2 isoform X1 | ||||
Refseq | XP_011021046.1 | 3e-43 | PREDICTED: transcription factor BIM2-like isoform X1 | ||||
Refseq | XP_015158971.1 | 3e-43 | PREDICTED: transcription factor BIM2-like isoform X1 | ||||
Refseq | XP_021674831.1 | 2e-43 | transcription factor BIM2-like isoform X2 | ||||
Refseq | XP_024462940.1 | 3e-43 | transcription factor BIM2 isoform X1 | ||||
Swissprot | Q9CAA4 | 5e-39 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | S8CDZ5 | 4e-61 | S8CDZ5_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0008s11120.1 | 1e-42 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4426 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-41 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|