PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62656.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 712aa    MW: 78565.9 Da    PI: 6.0322
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62656.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.5e-2058113156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  EPS62656.1  58 KKRYHRHTQHQIQEMEAFFNECPHPDDKQRKELGRRLGLEPLQVKFWFQNKRTQMK 113
                 688999***********************************************998 PP
2START206.31.2e-642404611206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+++ep+Wv+      e++ ++e++++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a+t+ev+s
  EPS62656.1 240 ELAVAAMEELMRLAQSGEPLWVQGHdgpsEMLSEEEYVKTFPRGIGpkplgMKSEASRESTVVIMNHINLVEILMDVN-QWSNLFSsivsRAATVEVLS 337
                 57899*******************9999***************999********************************.******99999********* PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-.-SSXX CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl.kgrlp 177
                 +g      galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ +  +++ R   +pSg+li++++ng+skv wvehv++ ++r++
  EPS62656.1 338 TGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHADGSWAVVDVSLDNLRSAS-VPKYRR---RPSGCLIQELPNGYSKVSWVEHVEVvDDRTV 432
                 ********************************************************99.588888...************************7368999 PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h+++++lv+sg+a+gak+wv tl+rqce+
  EPS62656.1 433 HSIYKPLVNSGHAFGAKRWVTTLDRQCER 461
                 ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-1942115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2143113IPR009057Homeodomain-like
PROSITE profilePS5007116.45555115IPR001356Homeobox domain
SMARTSM003899.7E-1956119IPR001356Homeobox domain
CDDcd000863.50E-1858116No hitNo description
PfamPF000461.4E-1758113IPR001356Homeobox domain
SuperFamilySSF559611.92E-34231463No hitNo description
PROSITE profilePS5084842.809231464IPR002913START domain
CDDcd088753.88E-123235460No hitNo description
SMARTSM002347.5E-62240461IPR002913START domain
PfamPF018521.1E-54241461IPR002913START domain
Gene3DG3DSA:3.30.530.204.4E-4309424IPR023393START-like domain
SuperFamilySSF559616.73E-26481705No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MFQPNMFDSH HHLLEMGHKT PENDLDIIRD DEYESKSGTD IMEAPSGDDQ DPNQRPKKKR  60
YHRHTQHQIQ EMEAFFNECP HPDDKQRKEL GRRLGLEPLQ VKFWFQNKRT QMKAQHERHD  120
NSQLRAENEK LRSDNIRYKE ALNNATCPNC GGPAAIGEMS FDEQHLRIEN ARLREEIDRI  180
SGIAAKCVGK SMLPYPDLPT RSLDLGVGSF VPPTGEIYSA SDLLRSVSGP TEAEKPVIIE  240
LAVAAMEELM RLAQSGEPLW VQGHDGPSEM LSEEEYVKTF PRGIGPKPLG MKSEASREST  300
VVIMNHINLV EILMDVNQWS NLFSSIVSRA ATVEVLSTGV AGNYNGALQV MTAEFQVPSP  360
LVPTRENYFV RYCKQHADGS WAVVDVSLDN LRSASVPKYR RRPSGCLIQE LPNGYSKVSW  420
VEHVEVVDDR TVHSIYKPLV NSGHAFGAKR WVTTLDRQCE RIASVMANNI SAGELGVISS  480
PEGRKSMLKL AERMVMSFCN GVGASKSHTW TTLSGSGVDE VRVMTRKSMD DPGRPPGIVL  540
SAATSFWLPV APKRVFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG NAVSLLRVNS  600
ANSSQSNMLI LQESSSDSTG SYVIYAPVDI DAMNVVLNGG DPDYVALLPS GFAILPDGNP  660
DVGSRGSLLT VAFQILVDSV PTAKLSLGSV ATVNSLIKCT VARIKSAVLC DV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096101.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096102.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_011096103.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554106.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_020554107.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLS8CDS70.0S8CDS7_9LAMI; Uncharacterized protein
STRINGMigut.M01293.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  4. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  5. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  6. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  7. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  8. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]