PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62626.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 379aa    MW: 40894.8 Da    PI: 4.9392
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62626.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.71.5e-91123764374
        GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 lLl+ Ae+v+ g+  +a +lL ++ el+sp g++ qR+ ayfteA++ar+  s  +            + +++++l+al++++ ++P++kfsh+taNqa
  EPS62626.1  12 LLLRSAECVAVGNVDEAAELLPEMVELSSPFGSSAQRVGAYFTEAISARIIASYLGGEGGGgGGGGLIRFHHQKVLSALQTYNSLTPLIKFSHFTANQA 110
                 89************************************************995544443332444444455999************************* PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..rledleleeLrv 196
                 I  av+g++rvH+iD+di+qGlQWp ++q Las+p  ++  s+R+T++g+    s + l +tg+rLa+fA++l++pfef  +  k  +++dle  +L++
  EPS62626.1 111 IQIAVDGSDRVHVIDLDIMQGLQWPGFFQILASKPrrRQLKSFRLTALGP----SGDVLDSTGRRLAEFAAALNIPFEFAGVEGKlgNIKDLE-GKLEL 204
                 *********************************99666778*********....9**************************744433555553.47888 PP

        GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 k+  +E+l+++++   h+++d  ++ ++     Lkl+k ++Pk++++veq+    + +++ +Fl+rf++al+yysa+fd+l  ++ +es er++vEr+l
  EPS62626.1 205 KSggEETLVIHWMQ--HSFYDVIGDESN----ALKLLKLMKPKIITIVEQDlrccCCCSGDDFLNRFVDALHYYSAIFDALGDGAEAESTERHTVERQL 297
                 888799******99..888866666666....*******************8874455999********************9999************** PP

        GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 lg ei+n++   ga+     e l+k +++++ +GF++v+l  + a+q +lll + +s+gy++ ee+g+l lgWkd +L+++SaW+
  EPS62626.1 298 LGYEIRNILGLGGAK-----EALGK-EKMMGVSGFRAVSLAGNPAAQGSLLLGMLPSEGYTMVEEDGCLRLGWKDLSLLTASAWE 376
                 **************9.....66666.79********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.3921356IPR005202Transcription factor GRAS
PfamPF035145.2E-8912376IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
DVDSAGLRLF GLLLRSAECV AVGNVDEAAE LLPEMVELSS PFGSSAQRVG AYFTEAISAR  60
IIASYLGGEG GGGGGGGLIR FHHQKVLSAL QTYNSLTPLI KFSHFTANQA IQIAVDGSDR  120
VHVIDLDIMQ GLQWPGFFQI LASKPRRRQL KSFRLTALGP SGDVLDSTGR RLAEFAAALN  180
IPFEFAGVEG KLGNIKDLEG KLELKSGGEE TLVIHWMQHS FYDVIGDESN ALKLLKLMKP  240
KIITIVEQDL RCCCCCSGDD FLNRFVDALH YYSAIFDALG DGAEAESTER HTVERQLLGY  300
EIRNILGLGG AKEALGKEKM MGVSGFRAVS LAGNPAAQGS LLLGMLPSEG YTMVEEDGCL  360
RLGWKDLSLL TASAWETCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-121337512377Protein SCARECROW
5b3h_D1e-121337512377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100390.11e-161scarecrow-like protein 23
SwissprotQ9FHZ11e-141SCL23_ARATH; Scarecrow-like protein 23
TrEMBLS8CDQ50.0S8CDQ5_9LAMI; Scarecrow-like protein 23 (Fragment)
STRINGXP_008451856.11e-143(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-130GRAS family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]