PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS62527.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | CPP | ||||||||
Protein Properties | Length: 171aa MW: 19232 Da PI: 8.5352 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 46.3 | 8.6e-15 | 11 | 48 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++++CnCk+s+Clk+YCeCfaa ++C+ C+C +C+N+ EPS62527.1 11 KQRQCNCKNSRCLKLYCECFAAATYCDG-CNCVNCHNNV 48 799*************************.********85 PP | |||||||
2 | TCR | 52.8 | 7.8e-17 | 87 | 125 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++kgC+Ckks ClkkYCeC++a+ Cse+C+C dCkN e EPS62527.1 87 HNKGCHCKKSTCLKKYCECYQANILCSEKCRCVDCKNYE 125 89***********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.2E-16 | 10 | 50 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 34.246 | 11 | 126 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.0E-11 | 13 | 47 | IPR005172 | CRC domain |
SMART | SM01114 | 3.6E-19 | 86 | 127 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 89 | 124 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
NADRNGVTPK KQRQCNCKNS RCLKLYCECF AAATYCDGCN CVNCHNNVVY DEFRRESMVA 60 ILERRPDAFK PKVASSPHGP SDRLVEHNKG CHCKKSTCLK KYCECYQANI LCSEKCRCVD 120 CKNYEGSEER KVHFLHHHQP PSIVSIQQAV NVSINSAIGS PASKIKAQNF G |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-31 | 12 | 132 | 11 | 129 | Protein lin-54 homolog |
5fd3_B | 7e-31 | 12 | 132 | 11 | 129 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012076724.1 | 8e-69 | protein tesmin/TSO1-like CXC 5 isoform X2 | ||||
Refseq | XP_012076725.1 | 7e-69 | protein tesmin/TSO1-like CXC 5 isoform X4 | ||||
Swissprot | Q9SZD1 | 4e-65 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | S8DRU7 | 1e-122 | S8DRU7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0006s16340.1 | 1e-67 | (Populus trichocarpa) | ||||
STRING | POPTR_0018s08960.1 | 3e-68 | (Populus trichocarpa) | ||||
STRING | XP_006451190.1 | 3e-67 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-57 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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