PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62410.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C3H

Protein Properties

Length: 375aa MW: 43858.8 Da PI: 8.8343

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62410.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	6.9e-07	355	373	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 Cr++a+ G C +GdrC+F+H EPS62410.1 355 CRHHAQ-GRCIFGDRCHFIH 373 9999.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF68906	1.37E-6	74	119	No hit	No description
Gene3D	G3DSA:1.10.720.30	2.9E-6	75	120	IPR003034	SAP domain
PROSITE profile	PS50800	10.366	85	119	IPR003034	SAP domain
SMART	SM00513	0.0094	85	119	IPR003034	SAP domain
Pfam	PF02037	2.4E-8	86	119	IPR003034	SAP domain
PROSITE profile	PS50103	12.699	349	375	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-4	355	373	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MAISPGDAEF ETDSEYSDGM TDDPTLYALE ETCLRVSELS VRRDKKSSIA QMSENDDEES 60 DAEELDEEDQ NTFERVQRII QVGEIERLKL EECKLYLRKH GLRLSGRKEM LIQRIKEHIN 120 IINVGGDKIY PISSFVINCK GDACTGDVVM FQQDVYEAFN VAYRGASAPS CGRRVTAGRI 180 VKDSYGSEKQ QHTFTIEVLW SKGEKALDPL RLLLIKGRNL YRLKTMRQRW KNEEERKKIL 240 EEKHARGDAA RTLREARLKR MEMLKPEKKK KQLTRDRGAT KGEHDDVEAA VEKKQRAVLR 300 MEVLRQRQPL PTQQRDDSRR EQLFPTHQEQ QPYRIYGGER WSYGRQKPPL VRMKCRHHAQ 360 GRCIFGDRCH FIHEY

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MAISPGDAEF ETDSEYSDGM TDDPTLYALE ETCLRVSELS VRRDKKSSIA QMSENDDEES  60
DAEELDEEDQ NTFERVQRII QVGEIERLKL EECKLYLRKH GLRLSGRKEM LIQRIKEHIN  120
IINVGGDKIY PISSFVINCK GDACTGDVVM FQQDVYEAFN VAYRGASAPS CGRRVTAGRI  180
VKDSYGSEKQ QHTFTIEVLW SKGEKALDPL RLLLIKGRNL YRLKTMRQRW KNEEERKKIL  240
EEKHARGDAA RTLREARLKR MEMLKPEKKK KQLTRDRGAT KGEHDDVEAA VEKKQRAVLR  300
MEVLRQRQPL PTQQRDDSRR EQLFPTHQEQ QPYRIYGGER WSYGRQKPPL VRMKCRHHAQ  360
GRCIFGDRCH FIHEY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	237	RQRWKNEEERKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012856218.1	1e-112	PREDICTED: zinc finger CCCH domain-containing protein 62-like
TrEMBL	S8C6K6	0.0	S8C6K6_9LAMI; Uncharacterized protein
STRING	Migut.I01108.1.p	1e-112	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3303	8	8

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]