PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS62367.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 623aa MW: 71360.9 Da PI: 7.2123

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS62367.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.9	2.2e-25	26	112	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ gkw++++++++HnHel p EPS62367.1 26 DYYKDYAKSVGFGTAKLSSRRSRSSKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKACGKWYIHSFVKDHNHELLP 112 59*************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-23	26	112	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-24	225	316	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.225	506	542	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-9	512	540	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-8	517	544	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
SRAVVSSSNS DPATGLVFDS HEAAYDYYKD YAKSVGFGTA KLSSRRSRSS KEFIDAKFSC 60 IRYGNKQQSD DAINPRPSPK IGCKASMHVK RKACGKWYIH SFVKDHNHEL LPDQVHFFRS 120 HRSTDSSSPH DAKLRKKRAL LPSGLNQFVS PCSIETVILN QNDRGRYLAL EEGDDAQVVL 180 EFCECMHLGN PNFFYALDFN EEHRLRNVLW VDAKGVEDFA YFDDVVSFDT TYFSTKYRVP 240 LVIFVGVNHH LQPLLLGCGL IADETLHTYV WLMQSWCLAM GGKTPKVILT DQNEVIKTAI 300 PLVFPGTRHF YHLCHVLEKI SRRVDYSRVW HETLVKKLNK CLYRSWDEEQ FKERWGKLIQ 360 RWNLQEDECI QSLYLDRKLW VPTFVRDVSF AGLSPASRSE SLNSHFDKYI HGDTSLRDFL 420 KNYRSIIADG YEEEAKANFD AWHETPELKS PSPFEKQVLF IYTAEIFRNF QTEVLGAAAC 480 HLKKEGEEDG SICCYSVKDL ESDLDFIVKC GKQGSDLRCS CGSFQYKGYL CRHAIVVLQM 540 TGVFNMPFKF ILKRWTNLAT STTPMSERLE EVQAKVQRYN DLCRRAVILG EEGSLSVESY 600 DAAHKAVNEA LCHCVHTNGG DES

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

SRAVVSSSNS DPATGLVFDS HEAAYDYYKD YAKSVGFGTA KLSSRRSRSS KEFIDAKFSC  60
IRYGNKQQSD DAINPRPSPK IGCKASMHVK RKACGKWYIH SFVKDHNHEL LPDQVHFFRS  120
HRSTDSSSPH DAKLRKKRAL LPSGLNQFVS PCSIETVILN QNDRGRYLAL EEGDDAQVVL  180
EFCECMHLGN PNFFYALDFN EEHRLRNVLW VDAKGVEDFA YFDDVVSFDT TYFSTKYRVP  240
LVIFVGVNHH LQPLLLGCGL IADETLHTYV WLMQSWCLAM GGKTPKVILT DQNEVIKTAI  300
PLVFPGTRHF YHLCHVLEKI SRRVDYSRVW HETLVKKLNK CLYRSWDEEQ FKERWGKLIQ  360
RWNLQEDECI QSLYLDRKLW VPTFVRDVSF AGLSPASRSE SLNSHFDKYI HGDTSLRDFL  420
KNYRSIIADG YEEEAKANFD AWHETPELKS PSPFEKQVLF IYTAEIFRNF QTEVLGAAAC  480
HLKKEGEEDG SICCYSVKDL ESDLDFIVKC GKQGSDLRCS CGSFQYKGYL CRHAIVVLQM  540
TGVFNMPFKF ILKRWTNLAT STTPMSERLE EVQAKVQRYN DLCRRAVILG EEGSLSVESY  600
DAAHKAVNEA LCHCVHTNGG DES

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072522.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_011072523.1	0.0	protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	S8DRG6	0.0	S8DRG6_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.I01028.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]