PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS62262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 146aa MW: 16572.9 Da PI: 10.4428 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 25 | 79 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Le+ F+ n+ +++++++eLA++l+L rqV vWFqNrRa+ k EPS62262.1 25 RKKLRLSKTQSALLEQSFKINSSLNQKQKQELAEELKLRPRQVEVWFQNRRARTK 79 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 113.2 | 1.7e-36 | 25 | 112 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlsk q++lLE+sF+ ++ L++++K+ela+eL+l+prqv+vWFqnrRARtk+kq+E d+++Lk+ +d+l++en+ L+++v++L+ EPS62262.1 25 RKKLRLSKTQSALLEQSFKINSSLNQKQKQELAEELKLRPRQVEVWFQNRRARTKLKQTEIDCAFLKKYCDTLTAENRWLQRQVKALK 112 69************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-17 | 12 | 79 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-18 | 14 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.605 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-15 | 23 | 85 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 25 | 79 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.84E-14 | 25 | 82 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 56 | 79 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.3E-7 | 81 | 113 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.4E-13 | 81 | 121 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
DVSFAVKRER VSPSSEDDDS PNSSRKKLRL SKTQSALLEQ SFKINSSLNQ KQKQELAEEL 60 KLRPRQVEVW FQNRRARTKL KQTEIDCAFL KKYCDTLTAE NRWLQRQVKA LKSGQPTYVQ 120 FPAVAALALC PSCERVSAAA KPSTTA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 29 | SRKKLRL |
2 | 73 | 81 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012854241.1 | 1e-56 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Refseq | XP_017237931.1 | 1e-56 | PREDICTED: homeobox-leucine zipper protein HAT22-like isoform X2 | ||||
Swissprot | P46665 | 2e-51 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | S8DR18 | 1e-100 | S8DR18_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.H00315.1.p | 5e-56 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 4e-50 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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