PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS62061.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 149aa    MW: 16488.4 Da    PI: 4.9611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS62061.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-19149355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+ +l+g
  EPS62061.1  1 YRGVRKRS-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVAAMALKG 49
                9****888.**********843...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.065157IPR001471AP2/ERF domain
PRINTSPR003675.6E-11112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-32158IPR001471AP2/ERF domain
SMARTSM003805.8E-33163IPR001471AP2/ERF domain
CDDcd000186.45E-29159No hitNo description
PfamPF008471.3E-13149IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22158IPR016177DNA-binding domain
PRINTSPR003675.6E-112339IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
YRGVRKRSWG KWVCEIREPR KKSRIWLGTY PTAEMAARAH DVAAMALKGR SAYLNFPALA  60
DRFPRPLSAS PQDIQAAAAK AAMMMMGGGS DPDPVPPPSA VNSESSDDCC DDAFFDLPDL  120
HLDSDDRFGD WLFSGSDFGF RHEDSASWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-171571572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093328.14e-50ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ72e-44ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLS8CCB21e-104S8CCB2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.B01558.1.p2e-48(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-25ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]