PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61835.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 459aa    MW: 51533.1 Da    PI: 9.6137
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61835.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3703.1e-113864581374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL+ cA+av+++d + a  +L++++++a+p+gd mqRla+yf+++L+ar+a+s++e+y al   +ts    ++ l+a++++  ++P+ ++s++  N
  EPS61835.1  86 LRTLLTLCAQAVAADDRQTAGDYLKQIRQHATPTGDGMQRLAHYFANGLEARMAGSGTEIYTALIKMPTS---AADILKAYHIYLATCPFKRLSNFFSN 181
                 5789************************************************************999998...8************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I++a +++ ++Hi+Df+i++G+QWp++lq L+ R +gpp lRiTg++ p sg   ++++eetg+rLa++A++++vpfefn+ +a+r+e++++e++++
  EPS61835.1 182 KTIMNASQNAAKLHIVDFGIQYGFQWPSFLQRLSRRVGGPPVLRITGIDFPCSGfrPANRVEETGRRLARYAATFKVPFEFNA-IAQRWETIRVEDIKI 279
                 ***************************************************99999***************************.7************** PP

        GRAS 197 kpgEalaVnlvl.qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                 + +E ++Vn+vl  l +l+desv ++ +r++vL+l+++++P v+v+   +  ++++ F +rf eal +ys++fd+lea++pr  +er+ +E+ ++g+e+
  EPS61835.1 280 EGDELVVVNSVLgGLRNLVDESVMVNCPRNRVLNLIREMNPSVFVMGILNGAYSAPFFITRFREALFHYSSFFDMLEANIPRGVHERMLLEKTIFGQEA 378
                 **********98358999999999999************************************************************************ PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +nv+acegaer+er et+++W++r  +aGF+ vpl+ ++ + ak+ ++  +++ + v+e+ +++++gWk+r + ++S+W+
  EPS61835.1 379 MNVIACEGAERIERPETYKQWQMRNVRAGFEMVPLERDVIERAKSRVELSYNKNFVVDEDGNWMLQGWKGRIVHAISSWK 458
                 ***************************************************999*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.460438IPR005202Transcription factor GRAS
PfamPF035141.1E-11086458IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
SKGKKNPYRG LEEDGPIRKQ SAICYESSLS PDVFDEVLLC SGGKNLSAIR DELNAAAVVV  60
TASRTSGGSS NGVKKNPGRR KSVVDLRTLL TLCAQAVAAD DRQTAGDYLK QIRQHATPTG  120
DGMQRLAHYF ANGLEARMAG SGTEIYTALI KMPTSAADIL KAYHIYLATC PFKRLSNFFS  180
NKTIMNASQN AAKLHIVDFG IQYGFQWPSF LQRLSRRVGG PPVLRITGID FPCSGFRPAN  240
RVEETGRRLA RYAATFKVPF EFNAIAQRWE TIRVEDIKIE GDELVVVNSV LGGLRNLVDE  300
SVMVNCPRNR VLNLIREMNP SVFVMGILNG AYSAPFFITR FREALFHYSS FFDMLEANIP  360
RGVHERMLLE KTIFGQEAMN VIACEGAERI ERPETYKQWQ MRNVRAGFEM VPLERDVIER  420
AKSRVELSYN KNFVVDEDGN WMLQGWKGRI VHAISSWKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-50864585375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012858558.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE581e-179SCL14_ARATH; Scarecrow-like protein 14
TrEMBLS8C5090.0S8C509_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.F00778.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-179SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]