PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS61835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GRAS | ||||||||
Protein Properties | Length: 459aa MW: 51533.1 Da PI: 9.6137 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 370 | 3.1e-113 | 86 | 458 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL+ cA+av+++d + a +L++++++a+p+gd mqRla+yf+++L+ar+a+s++e+y al +ts ++ l+a++++ ++P+ ++s++ N EPS61835.1 86 LRTLLTLCAQAVAADDRQTAGDYLKQIRQHATPTGDGMQRLAHYFANGLEARMAGSGTEIYTALIKMPTS---AADILKAYHIYLATCPFKRLSNFFSN 181 5789************************************************************999998...8************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++I++a +++ ++Hi+Df+i++G+QWp++lq L+ R +gpp lRiTg++ p sg ++++eetg+rLa++A++++vpfefn+ +a+r+e++++e++++ EPS61835.1 182 KTIMNASQNAAKLHIVDFGIQYGFQWPSFLQRLSRRVGGPPVLRITGIDFPCSGfrPANRVEETGRRLARYAATFKVPFEFNA-IAQRWETIRVEDIKI 279 ***************************************************99999***************************.7************** PP GRAS 197 kpgEalaVnlvl.qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 + +E ++Vn+vl l +l+desv ++ +r++vL+l+++++P v+v+ + ++++ F +rf eal +ys++fd+lea++pr +er+ +E+ ++g+e+ EPS61835.1 280 EGDELVVVNSVLgGLRNLVDESVMVNCPRNRVLNLIREMNPSVFVMGILNGAYSAPFFITRFREALFHYSSFFDMLEANIPRGVHERMLLEKTIFGQEA 378 **********98358999999999999************************************************************************ PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +nv+acegaer+er et+++W++r +aGF+ vpl+ ++ + ak+ ++ +++ + v+e+ +++++gWk+r + ++S+W+ EPS61835.1 379 MNVIACEGAERIERPETYKQWQMRNVRAGFEMVPLERDVIERAKSRVELSYNKNFVVDEDGNWMLQGWKGRIVHAISSWK 458 ***************************************************999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.4 | 60 | 438 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-110 | 86 | 458 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
SKGKKNPYRG LEEDGPIRKQ SAICYESSLS PDVFDEVLLC SGGKNLSAIR DELNAAAVVV 60 TASRTSGGSS NGVKKNPGRR KSVVDLRTLL TLCAQAVAAD DRQTAGDYLK QIRQHATPTG 120 DGMQRLAHYF ANGLEARMAG SGTEIYTALI KMPTSAADIL KAYHIYLATC PFKRLSNFFS 180 NKTIMNASQN AAKLHIVDFG IQYGFQWPSF LQRLSRRVGG PPVLRITGID FPCSGFRPAN 240 RVEETGRRLA RYAATFKVPF EFNAIAQRWE TIRVEDIKIE GDELVVVNSV LGGLRNLVDE 300 SVMVNCPRNR VLNLIREMNP SVFVMGILNG AYSAPFFITR FREALFHYSS FFDMLEANIP 360 RGVHERMLLE KTIFGQEAMN VIACEGAERI ERPETYKQWQ MRNVRAGFEM VPLERDVIER 420 AKSRVELSYN KNFVVDEDGN WMLQGWKGRI VHAISSWKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-50 | 86 | 458 | 5 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012858558.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-179 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | S8C509 | 0.0 | S8C509_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.F00778.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-179 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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