PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61812.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 186aa    MW: 20396.3 Da    PI: 4.5489
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61812.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-203382255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 ykGVr++  +g+WvAeIr+p   + r  r++lg+f+t +eAa a++aa++kl+g
  EPS61812.1 33 TYKGVRQRT-WGKWVAEIREP---N-RgSRVWLGTFDTSYEAAIAYDAAARKLYG 82
                69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.58E-193292No hitNo description
PROSITE profilePS5103221.7863390IPR001471AP2/ERF domain
PfamPF008474.2E-143382IPR001471AP2/ERF domain
SMARTSM003803.8E-353396IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-213391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-303391IPR001471AP2/ERF domain
PRINTSPR003676.6E-103445IPR001471AP2/ERF domain
PRINTSPR003676.6E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
AEERKTAGRK PAQASSRKGC MRGKGGPENA SCTYKGVRQR TWGKWVAEIR EPNRGSRVWL  60
GTFDTSYEAA IAYDAAARKL YGPEAKVNLP HLYEDRAAEE EEEEDGSSIA NFDSPENGFA  120
GDGGEFASCS GILQNLNMNL PEVDDSYLWA EAAKDTSFQI VHDPGAFASS LDYGKDNNGV  180
PFPWLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-163490663ATERF1
3gcc_A3e-163490663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083628.15e-96dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ21e-53DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLS8DPU11e-135S8DPU1_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.C00778.1.p4e-67(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.14e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]