PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61457.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARF
Protein Properties Length: 482aa    MW: 53061.7 Da    PI: 5.0353
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61457.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22115216199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+kvlt+sd+++ g +++ +++ae++         ++ +  tl+ +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD vvF   ++++++l
  EPS61457.1 115 FVKVLTQSDANNGGGFSVRRNCAESIfppldykADPPVQ--TLSATDIHGTVWNFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDAVVFL--RDENGHL 209
                 99****************************995444444..9************************************************..5689989 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 ++++ r+
  EPS61457.1 210 CIGIQRA 216
                 9998775 PP
2Auxin_resp96.54.1e-32247327383
  Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  +a+ + +FevvY+Pra+t+eF+vk + v++++++++++GmRfkm +e+edss++++ sGt++ v+ +dp +Wp S+W++L+
  EPS61457.1 247 ASAADGRPFEVVYYPRAGTPEFCVKSSTVKASMRTNWCAGMRFKMPLENEDSSQITWfSGTISNVHYSDP-KWPYSPWKLLQ 327
                 5788999***************************************************************.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-36110220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-29111218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.041115217IPR003340B3 DNA binding domain
CDDcd100177.72E-21115213No hitNo description
SMARTSM010192.1E-20115217IPR003340B3 DNA binding domain
PfamPF023622.7E-20115216IPR003340B3 DNA binding domain
PfamPF065071.0E-26247327IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVTPMSSSEK CLNSRLWNAC AGALFRLPDV NSTVVYFPQG HAEHAVSAVD FGPLLPRIPP  60
LVLCRVDSVK PSADPETDEL YVRMRLIPVE PSSFYAFDDG GESPASDSGE RLQPFVKVLT  120
QSDANNGGGF SVRRNCAESI FPPLDYKADP PVQTLSATDI HGTVWNFRHI YRGTPRRHLL  180
TTGWSNFVNQ KKLVAGDAVV FLRDENGHLC IGIQRARRDS AAAWIYDKKA ASENGKVDPD  240
AVFESAASAA DGRPFEVVYY PRAGTPEFCV KSSTVKASMR TNWCAGMRFK MPLENEDSSQ  300
ITWFSGTISN VHYSDPKWPY SPWKLLQVTW DEEPDSCEDL RRVSPWMIEV VSSMSFLPVS  360
PSSSPLKKLR VLHSTGFLPI DGPPSFSVDP PPVFRSNAAA ACCLIRPSEE VTATPGIQGT  420
RQLTTDELMR TEVLDNKSSC VTDENNEDGS PEGKKEEPIL TQEQMSAPPA DREPPGTGPL  480
SF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-761235551394Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089287.11e-159auxin response factor 18 isoform X1
RefseqXP_011089288.11e-159auxin response factor 18 isoform X2
RefseqXP_020552360.11e-159auxin response factor 18 isoform X1
RefseqXP_020552361.11e-159auxin response factor 22 isoform X3
SwissprotQ93YR91e-144ARFP_ARATH; Auxin response factor 16
TrEMBLS8DP310.0S8DP31_9LAMI; Auxin response factor
STRINGXP_009602946.11e-153(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-140auxin response factor 16
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  3. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  4. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  5. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  6. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  7. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]