PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS61416.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 148aa MW: 16962.5 Da PI: 10.0693 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.6 | 3.2e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v+ +G+g+W+ ++++ g++R++k+c++rw +yl EPS61416.1 14 RGPWTPEEDAKILAYVASHGTGNWTFVPQKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8.2e-17 | 70 | 110 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eE++ +v++++ G++ W++Iar+++ gRt++++k++w++ EPS61416.1 70 FTPEEEQCIVELHRTIGSR-WSLIARRLP-GRTDNDVKNYWNT 110 9******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.412 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.44E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.33E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.54 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 70 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.14E-11 | 70 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MGRPPCCDKA NVKRGPWTPE EDAKILAYVA SHGTGNWTFV PQKAGLNRCG KSCRLRWTNY 60 LRPDLKHDGF TPEEEQCIVE LHRTIGSRWS LIARRLPGRT DNDVKNYWNT KLKKKLTKMG 120 IDPVTHKPFS QLFSEYGKIS MNSADPFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-31 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012841337.1 | 3e-96 | PREDICTED: myb-related protein 308 | ||||
Swissprot | Q9LSI7 | 7e-76 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | S8CAN1 | 1e-108 | S8CAN1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.H00878.1.p | 1e-95 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 3e-78 | MYB family protein |
Publications ? help Back to Top | |||
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