PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS61383.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 151aa    MW: 17660.9 Da    PI: 9.6502
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS61383.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-202375456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++++++eq+  Le+ F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  EPS61383.1 23 KRKLSEEQVSMLERSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWK 75
                45899***********************************************9 PP
2HD-ZIP_I/II117.86.2e-3822113293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +kr+ls+eqv++LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k++E++y++Lk+++++ + e++rLe++  +L+e+l+e
   EPS61383.1  22 RKRKLSEEQVSMLERSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKSKKIEEEYSRLKAELENSVVEKCRLETQLLKLKEQLDE 113
                  8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.0861777IPR001356Homeobox domain
SMARTSM003891.4E-202081IPR001356Homeobox domain
SuperFamilySSF466891.11E-182286IPR009057Homeodomain-like
CDDcd000861.43E-132278No hitNo description
PfamPF000469.9E-182375IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-212484IPR009057Homeodomain-like
PRINTSPR000315.5E-64857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000315.5E-65773IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
EGNKQPRRRR RKSKGCDDGG MRKRKLSEEQ VSMLERSFGD EHKLESERKD RLAAELGLDP  60
RQVAVWFQNR RARWKSKKIE EEYSRLKAEL ENSVVEKCRL ETQLLKLKEQ LDEAEKEIQR  120
LSENGFSSNS PCSSFSMDAP PRRFVGDFAA E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1724RRRRKSKGCDDGGMRKRK
2813RRRKSK
3924RRKSKGCDDGGMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065260.12e-61homeobox-leucine zipper protein ATHB-40
SwissprotO232084e-57ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLS8DF561e-103S8DF56_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc02g085630.2.12e-60(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-47homeobox protein 40
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]