PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS61231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 123aa MW: 14280.5 Da PI: 10.8946 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 rg+W+ E ll+++++q+G g+W++ +++ + R++k+c++rw +yl EPS61231.1 14 RGPWSNKENALLINYIQQHGEGQWRSLPKKAAgLLRCGKSCRLRWMNYL 62 89*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l EPS61231.1 68 RGNISEDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 113 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.318 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.39E-28 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.22E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 24.731 | 63 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 66 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.90E-11 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MGRSPCCSKE GLRRGPWSNK ENALLINYIQ QHGEGQWRSL PKKAAGLLRC GKSCRLRWMN 60 YLRPGIKRGN ISEDEEDLIL RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN THLVKRLDNK 120 STK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 12 | 119 | 5 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070362.1 | 1e-72 | transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 1e-60 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | S8CA46 | 1e-83 | S8CA46_9LAMI; Myb transcription factor (Fragment) | ||||
STRING | Migut.O00736.1.p | 5e-69 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 5e-63 | myb domain protein 5 |
Publications ? help Back to Top | |||
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