PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS61174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | LFY | ||||||||
Protein Properties | Length: 278aa MW: 31165.8 Da PI: 4.6245 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 380.7 | 2.2e-116 | 1 | 278 | 1 | 281 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseap.leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifr 98 mdp+afsaslfkwdpra p rlle+ + ++ p +aa + r+l +leelf+ayG+ry+t+akiaelGftv+tL+dm+deeld++m+sls+ifr EPS61174.1 1 MDPDAFSASLFKWDPRAGLPL-PGRLLETVVPAALPpPQAAYSLRPRELGGLEELFQAYGIRYFTAAKIAELGFTVNTLLDMRDEELDEMMDSLSHIFR 98 9***************88754.5566655554444324566667777799************************************************* PP FLO_LFY 99 ldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaee.kkseeekkkaskk.kqkr 195 +dllvGeryGikaavraerrrl+eee ++rr++ls d+ + ldalsqeglseepvq+ekeaagsgg+ +e+v+a+ ++k++++k+ + r EPS61174.1 99 WDLLVGERYGIKAAVRAERRRLDEEE--ARRRHFLSGDTPHPLDALSQEGLSEEPVQQEKEAAGSGGGA--VWEMVTAAGvGGVGARKQQRRKNyRGGR 193 ************************88..89999********************************9998..8888888773333333333333324444 PP FLO_LFY 196 kkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkv 281 ++ +++ ee++++ee+e +++++ +g+erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkv EPS61174.1 194 SRMASME-EEEDEDEETEGAEDDDNCGGGNERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKV 278 4444433.3444445555666666777799*******************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.5E-122 | 1 | 278 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDPDAFSASL FKWDPRAGLP LPGRLLETVV PAALPPPQAA YSLRPRELGG LEELFQAYGI 60 RYFTAAKIAE LGFTVNTLLD MRDEELDEMM DSLSHIFRWD LLVGERYGIK AAVRAERRRL 120 DEEEARRRHF LSGDTPHPLD ALSQEGLSEE PVQQEKEAAG SGGGAVWEMV TAAGVGGVGA 180 RKQQRRKNYR GGRSRMASME EEEDEDEETE GAEDDDNCGG GNERQREHPF IVTEPGEVAR 240 GKKNGLDYLF HLYEQCREFL IQVQNIAKER GEKCPTKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 8e-32 | 221 | 278 | 2 | 59 | PROTEIN LEAFY |
2vy2_A | 8e-32 | 221 | 278 | 2 | 59 | PROTEIN LEAFY |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for flower development. FLO may interact in a sequential manner with other homeotic genes affecting floral organ identity. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012856831.1 | 1e-140 | PREDICTED: floricaula protein-like | ||||
Swissprot | P23915 | 1e-128 | FLO_ANTMA; Floricaula protein | ||||
TrEMBL | S8C3D9 | 0.0 | S8C3D9_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.I00669.1.p | 1e-139 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6668 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 2e-58 | floral meristem identity control protein LEAFY (LFY) |
Publications ? help Back to Top | |||
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