PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS61097.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

DBB

Protein Properties

Length: 460aa MW: 50367.9 Da PI: 4.8291

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS61097.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.8	1.6e-06	3	41	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++ + l+C+ ++ lC +C ++ H+ H EPS61097.1 3 DCDFCGSRTAVLYCRADSAKLCLSCDSHVHSAnavsrkH 41 6***************************99555555555 PP
2	zf-B_box	16.9	1.4e-05	44	89	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+++ ++++ C +++ lC+dC H + H+++pl EPS61097.1 44 SQICDNCAAEPASCRCATDGLVLCQDCDCDAHGScaasaaHDRSPL 89 579*************************999944888888988775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.798	1	46	IPR000315	B-box-type zinc finger
SMART	SM00336	1.1E-8	1	46	IPR000315	B-box-type zinc finger
CDD	cd00021	1.80E-7	4	34	No hit	No description
PROSITE profile	PS50119	9.641	42	89	IPR000315	B-box-type zinc finger
CDD	cd00021	1.98E-4	46	89	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MVDCDFCGSR TAVLYCRADS AKLCLSCDSH VHSANAVSRK HIRSQICDNC AAEPASCRCA 60 TDGLVLCQDC DCDAHGSCAA SAAHDRSPLE GFSGVPSGFE LASSWGLEIE ETKTEEPYEW 120 AGLLEELMVP NSNSFVFSDC GGESAKRKNP TCGKQKQVIM KQLLELLADG DRSTGGRIAD 180 AEESDPPRTP TSDYWRPENL DSHFEEQSEQ QGNNQLNSGV GFTTLLMMQQ NHHLADPKEE 240 PNLLFNNGGA AIDNRTQIWD FNLGQLRGQE ESTAVEIDYG SDFLLYDGKH HENLLKKAKR 300 QGTTTTECFN DMIPFGGVPS STSESNNLQR PPSLCSSEKK NKCFGDIIPF TDHQCIIPGR 360 SDVPAMTKAD IETIAKNRGT INISDMNREK RGLIPGSDFR GEEDIEAHTA WHYHGGGGRR 420 IVPRCGRFKI FSVDLSSFKA CIGCGGEEED GSGGYRLVDK

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MVDCDFCGSR TAVLYCRADS AKLCLSCDSH VHSANAVSRK HIRSQICDNC AAEPASCRCA  60
TDGLVLCQDC DCDAHGSCAA SAAHDRSPLE GFSGVPSGFE LASSWGLEIE ETKTEEPYEW  120
AGLLEELMVP NSNSFVFSDC GGESAKRKNP TCGKQKQVIM KQLLELLADG DRSTGGRIAD  180
AEESDPPRTP TSDYWRPENL DSHFEEQSEQ QGNNQLNSGV GFTTLLMMQQ NHHLADPKEE  240
PNLLFNNGGA AIDNRTQIWD FNLGQLRGQE ESTAVEIDYG SDFLLYDGKH HENLLKKAKR  300
QGTTTTECFN DMIPFGGVPS STSESNNLQR PPSLCSSEKK NKCFGDIIPF TDHQCIIPGR  360
SDVPAMTKAD IETIAKNRGT INISDMNREK RGLIPGSDFR GEEDIEAHTA WHYHGGGGRR  420
IVPRCGRFKI FSVDLSSFKA CIGCGGEEED GSGGYRLVDK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086854.2	1e-128	LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 14
TrEMBL	S8DN04	0.0	S8DN04_9LAMI; Uncharacterized protein
STRING	Migut.K01031.1.p	1e-123	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6703	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.2	1e-64	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]