PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS60950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | FAR1 | ||||||||
Protein Properties | Length: 187aa MW: 21312.4 Da PI: 10.1108 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.5 | 1.4e-25 | 27 | 117 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA++vGF vr+ + + s+++g++ r++ C+k+g++ +++ k ++k +ra+ r gCka++ k++k+g+w vt++++eHnH+l+ EPS60950.1 27 RFYHDYARRVGFVVRIMQRRCSEMDGRTLARRLGCNKQGFSPPTTAKgKKKVAGRRASAREGCKATILFKLDKSGNWAVTRFVKEHNHPLV 117 5****************************************999988445555699*********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-24 | 27 | 117 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
RDDEIDEGGS PSPYVGMEFK SEDEARRFYH DYARRVGFVV RIMQRRCSEM DGRTLARRLG 60 CNKQGFSPPT TAKGKKKVAG RRASAREGCK ATILFKLDKS GNWAVTRFVK EHNHPLVVLP 120 TPASHSQFPI IDKDKKIQQL TLELKQQEEL CSSYRNKLLS LLDCIQKQTD ELSSKLLTVS 180 QNIRKGE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012833525.1 | 5e-80 | PREDICTED: protein FAR1-RELATED SEQUENCE 12 | ||||
TrEMBL | S8C2D2 | 1e-137 | S8C2D2_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.N00673.1.p | 5e-79 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 8e-51 | FAR1 family protein |
Publications ? help Back to Top | |||
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