PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60901.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family SRS
Protein Properties Length: 374aa    MW: 39383 Da    PI: 7.3982
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60901.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.43.1e-671403063154
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.................aeaaskrkrelkskkqs 84 
                  g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaa rrerqq+l++++++ ++s+                 +++++++++ + s++++
  EPS60901.1 140 GGGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCSTHVKSTWVPAAVRRERQQRLSTLQQTPQNSShrdggaaaaagkrqrgeENNSNNNNNASPSNNNN 238
                 5789**************************************************999988777667899886555544443211111222222445555 PP

      DUF702  85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 al +t+++++ s   le  ++P+evsseavfrcvrvssvd+g+++laYqtav+i GhvfkGiLydqG+e+
  EPS60901.1 239 ALVCTRIPTTLS--GLELGNFPAEVSSEAVFRCVRVSSVDEGDDQLAYQTAVNICGHVFKGILYDQGTES 306
                 666666665543..456666***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.6E-65142305IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016238.1E-27144186IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016246.7E-27257303IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAGFFSLGTA TNNNNSSSSN NAAGGGTTPT PAADRDPPTE INPETWFLFR NEENNPYKGF  60
ELWQPQAEAG AHHHHPHHHH HHPSENFLQR GGVVGGSNTL QDLYASAGGL AVGPSRGSGF  120
SISGDHSPRS SFLMMRSSGG GGISCQDCGN QAKKDCAHMR CRTCCKSRGF QCSTHVKSTW  180
VPAAVRRERQ QRLSTLQQTP QNSSHRDGGA AAAAGKRQRG EENNSNNNNN ASPSNNNNAL  240
VCTRIPTTLS GLELGNFPAE VSSEAVFRCV RVSSVDEGDD QLAYQTAVNI CGHVFKGILY  300
DQGTESQYMA GETSSGGGSV SASAGAVQQL NLITGGGSAT ATSTAGASHL DPNLYPAPIN  360
SFISGTQFFP PPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269|PubMed:24142382, ECO:0000269|PubMed:24884371}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100954.11e-136protein SHORT INTERNODES
SwissprotK4B6C91e-91EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBLS8C9900.0S8C990_9LAMI; Uncharacterized protein
STRINGMigut.L00031.1.p1e-114(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.12e-77Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]