PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS60880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 123aa MW: 14850.8 Da PI: 10.0675 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.6e-21 | 21 | 73 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le++F ++++ e++ ++A+ lgL+ rqV vWFqNrRa++k EPS60880.1 21 KRKLSEEQVNMLERYFGDDHKLESERKDRIAADLGLDPRQVAVWFQNRRARWK 73 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.2 | 1.8e-37 | 20 | 111 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv++LE+ F ++kLe+erK ++a +Lgl+prqvavWFqnrRAR+k+k+lE++y +Lk+++++ e++rLe++ ++L+e+l+e EPS60880.1 20 RKRKLSEEQVNMLERYFGDDHKLESERKDRIAADLGLDPRQVAVWFQNRRARWKSKKLEEEYLRLKAEHENSFVEKCRLETQLAKLKEQLDE 111 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.925 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-20 | 18 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.59E-17 | 20 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.32E-12 | 20 | 76 | No hit | No description |
Pfam | PF00046 | 3.1E-18 | 21 | 73 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 22 | 81 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.9E-5 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-5 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
QPRRRRKKNQ AEGEDAAAMR KRKLSEEQVN MLERYFGDDH KLESERKDRI AADLGLDPRQ 60 VAVWFQNRRA RWKSKKLEEE YLRLKAEHEN SFVEKCRLET QLAKLKEQLD EAEREIQRLS 120 ERG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 22 | RKKNQAEGEDAAAMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099589.2 | 1e-54 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-53 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | S8C296 | 2e-81 | S8C296_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | POPTR_0005s12760.1 | 3e-53 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-56 | homeobox protein 40 |
Publications ? help Back to Top | |||
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