PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS60670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | NF-YC | ||||||||
Protein Properties | Length: 200aa MW: 22790.8 Da PI: 6.2282 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 172.9 | 3.5e-54 | 22 | 124 | 2 | 101 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 l++fw+ q i++atdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlr+w+h+eenkrrtl+k+diaaa+trtdifdflvdivp EPS60670.1 22 LEQFWAGQyqeIDQATDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 120 789**9887789*************************************************************************************** PP NF-YC 98 rdel 101 r++l EPS60670.1 121 REDL 124 *987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.29E-33 | 11 | 115 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.1E-22 | 43 | 106 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.7E-38 | 44 | 121 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
AHHQYAYQHI HQQHQEQLQH RLEQFWAGQY QEIDQATDFK NHSLPLARIK KIMKADEDVR 60 MISAEAPVIF ARACEMFILE LTLRAWNHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP 120 REDLKDEVFA ASVPRGPPIP PPPEGLPYYY MPAAASVGAP GMYVGKPVDP SVYGQPPPQQ 180 SVSYMTQPIW PQQPHPAADS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-60 | 28 | 121 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 99 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121247.1 | 3e-98 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027121248.1 | 3e-98 | nuclear transcription factor Y subunit C-9-like isoform X1 | ||||
Refseq | XP_027164987.1 | 2e-98 | nuclear transcription factor Y subunit C-9-like isoform X2 | ||||
Swissprot | Q8L4B2 | 6e-77 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | S8C1M5 | 1e-146 | S8C1M5_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.G00300.1.p | 5e-95 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3422 | 24 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 3e-73 | nuclear factor Y, subunit C3 |