PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60588.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SBP

Protein Properties

Length: 119aa MW: 13821.6 Da PI: 10.3479

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60588.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.7	2.9e-42	25	102	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dl++ak+yhrrh++Cevhsk+p+v+v+g+e+rfCqqCsrfhelsefD++krsCrrrL++hn+rrr+ q+ EPS60588.1 25 CCQVEGCNLDLKSAKDYHRRHRICEVHSKSPKVIVAGMERRFCQQCSRFHELSEFDDKKRSCRRRLSDHNARRRRVQP 102 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.0E-35	20	87	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.659	23	100	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-39	24	105	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-33	26	99	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
SSPHPDSSTP SKRSRASYHH IQNPCCQVEG CNLDLKSAKD YHRRHRICEV HSKSPKVIVA 60 GMERRFCQQC SRFHELSEFD DKKRSCRRRL SDHNARRRRV QPESFQLKTP ALSSALYSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-31	26	99	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	98	KKRSCRRRLSDHNARRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874058.1	1e-59	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 3
Swissprot	A2X0Q6	2e-43	SPL3_ORYSI; Squamosa promoter-binding-like protein 3
Swissprot	A3A2Z8	2e-43	SPL3_ORYSJ; Squamosa promoter-binding-like protein 3
TrEMBL	S8DCQ4	4e-81	S8DCQ4_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_010252163.1	2e-55	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-44	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]