PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60558.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SRS

Protein Properties

Length: 316aa MW: 32566.1 Da PI: 7.765

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60558.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213.6	4.5e-66	102	262	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaesk 97 +g a+CqdCGnqakkdC h+RCRtCCksrg+dCathvkstWvpaa+rrerq + a+ aaa+ +++ sk++r +s++++t++s+++++ EPS60558.1 102 AGIATCQDCGNQAKKDCPHRRCRTCCKSRGYDCATHVKSTWVPAARRRERQLMSDGAADAAAAAPgsshSTSGSKKPR--LGGGASQTTTTSTSNTTPP 198 56789*******************************************9888776665555444422444455555..4577777777888888888 PP DUF702 98 keletss........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++t+ +P +v+++a+f+cvrv+++ddge+e+aYq++v+igGh+fkG+LydqG + EPS60558.1 199 RSVDTTItsnhhgddFPGQVKAPAIFKCVRVTALDDGEDEYAYQAVVKIGGHIFKGFLYDQGRD 262 888776667889999*********************************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.3E-62	105	262	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.9E-27	106	148	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.1E-29	214	260	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
EFFFVAPASS FHSQDAVAGG FSAPSAAAFS FEHSINAVGV IPLLTATPCL APPPAEVHGG 60 DAAGGEGMLG DNSQRGRVGM QLWRHQQSSK KPMILEASNS GAGIATCQDC GNQAKKDCPH 120 RRCRTCCKSR GYDCATHVKS TWVPAARRRE RQLMSDGAAD AAAAAPGSSH STSGSKKPRL 180 GGGASQTTTT STSNTTPPRS VDTTITSNHH GDDFPGQVKA PAIFKCVRVT ALDDGEDEYA 240 YQAVVKIGGH IFKGFLYDQG RDGLPNISEL YLGGNSGGAG AGKPTGTSSS TPVMDPADLY 300 GGGMMGGSSG YGNHIN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020552557.1	1e-102	protein LATERAL ROOT PRIMORDIUM 1-like
TrEMBL	S8DCM1	0.0	S8DCM1_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N02371.1.p	1e-100	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-58	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]