PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS60442.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GATA | ||||||||
Protein Properties | Length: 144aa MW: 15160.1 Da PI: 8.6826 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60 | 3.1e-19 | 57 | 90 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C ttkTplWR+gp g+k+LCnaCG+++rk + EPS60442.1 57 CADCSTTKTPLWRSGPKGPKSLCNACGIRQRKAR 90 ********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.637 | 51 | 87 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.5E-17 | 51 | 102 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.28E-13 | 52 | 92 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.4E-16 | 55 | 91 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.19E-12 | 56 | 86 | No hit | No description |
Pfam | PF00320 | 5.7E-17 | 57 | 90 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 57 | 82 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MNNLQHEDSD GQRPPTDDEG IMRMPKKSRG GGGSEEAAAA ASPLEPDPGG SHGHRVCADC 60 STTKTPLWRS GPKGPKSLCN ACGIRQRKAR RAIEAAAAAT VEDSGLFNKK KAKHLAAIHS 120 RVSTEDDRDA AILLMALSLG LIHG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925019.1 | 7e-26 | protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
Swissprot | Q9FJ10 | 8e-20 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | S8DLL4 | 1e-100 | S8DLL4_9LAMI; Uncharacterized protein | ||||
STRING | GLYMA15G18380.1 | 2e-24 | (Glycine max) | ||||
STRING | XP_008797761.1 | 9e-26 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1999 | 23 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 5e-17 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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