PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60436.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

MYB

Protein Properties

Length: 300aa MW: 32602.9 Da PI: 5.7498

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60436.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.7	2.7e-18	8	53	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed ll ++vk +G ++W++Iar ++ gR++k+c++rw + EPS60436.1 8 KGPWSPDEDSLLNQLVKNHGARNWSLIARGIP-GRSGKSCRLRWCNQ 53 79****************************.*********985 PP
2	Myb_DNA-binding	55.4	1.4e-17	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T +Ed ++++a++ +G++ W++Iar ++ gRt++ +k++w++ EPS60436.1 60 RKAFTDDEDRIILEAHAVHGNK-WASIARLLP-GRTDNAIKNHWNST 104 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.846	3	54	IPR017930	Myb domain
SuperFamily	SSF46689	5.24E-30	5	101	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-14	7	56	IPR001005	SANT/Myb domain
Pfam	PF00249	2.2E-17	8	53	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-26	9	61	IPR009057	Homeodomain-like
CDD	cd00167	1.16E-14	10	52	No hit	No description
PROSITE profile	PS51294	27.581	55	109	IPR017930	Myb domain
SMART	SM00717	1.7E-16	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-15	60	104	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-23	62	108	IPR009057	Homeodomain-like
CDD	cd00167	8.61E-13	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
KKSFDRVKGP WSPDEDSLLN QLVKNHGARN WSLIARGIPG RSGKSCRLRW CNQLDPSVKR 60 KAFTDDEDRI ILEAHAVHGN KWASIARLLP GRTDNAIKNH WNSTLKRRQV GKTKKSLLSN 120 TVEETRAASS GETPSLGDAN SLKSVDGKND AMNSVESRDD DTSHEEEEEE EEDEPLPENN 180 CHPTDHPTVF HPLSRASAFT AYNAVDSTPP PVVVRPTSHQ ASSASQQQPS DNTDAGIIKL 240 LEEANGESLV PLHCGHGCCE TSSGISPKKG GSVLGPEFMD YAESPSLTCH ELAALAADIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-43	5	108	4	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094946.1	1e-114	transcription factor MYB1
Refseq	XP_022887484.1	1e-114	transcription factor MYB1
TrEMBL	S8C7U5	0.0	S8C7U5_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.J00247.1.p	1e-102	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2611	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	5e-74	myb domain protein 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]