PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60385.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 129aa    MW: 14815.8 Da    PI: 5.9508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60385.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-1761111255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp  n  r r++lg++ taeeA  a+++a+  ++g
  EPS60385.1  61 RYRGVRRRP-WGKFAAEIRDPARN--RSRIWLGTYETAEEAGLAYDRAAFMIRG 111
                 7********.**********8544..6**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-1361111IPR001471AP2/ERF domain
PROSITE profilePS5103223.89461119IPR001471AP2/ERF domain
SMARTSM003801.1E-3461125IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2361120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-3161120IPR001471AP2/ERF domain
PRINTSPR003671.3E-106273IPR001471AP2/ERF domain
CDDcd000181.54E-2469120No hitNo description
PRINTSPR003671.3E-1085101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MSFLTEIPWG ELPLRVDDSD DMVIYSLLND AVNDGWMPFI DVKSEPETPE AKPVTTTMRR  60
RYRGVRRRPW GKFAAEIRDP ARNRSRIWLG TYETAEEAGL AYDRAAFMIR GSKALLNFPH  120
MIGSNEPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3060126470ATERF1
3gcc_A2e-3060126470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076437.24e-56LOW QUALITY PROTEIN: ethylene-responsive transcription factor 2-like
SwissprotQ9LW501e-53ERF2_NICSY; Ethylene-responsive transcription factor 2
TrEMBLS8C0S81e-89S8C0S8_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.F00528.1.p5e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-41ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]