PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60283.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 251aa    MW: 27229.8 Da    PI: 9.4549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60283.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1867117256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  EPS60283.1  67 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 117
                 59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.14E-1466126No hitNo description
SMARTSM003806.8E-3667130IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2267125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-3167125IPR001471AP2/ERF domain
PROSITE profilePS5103223.23567124IPR001471AP2/ERF domain
PfamPF008478.6E-1368117IPR001471AP2/ERF domain
PRINTSPR003673.6E-106879IPR001471AP2/ERF domain
PRINTSPR003673.6E-1090106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
IGSSLSQIIL SSNHCNTLDS IFSYLNNPNP APLPDFAVPV FSDRSAAAVP PAIIPRATYF  60
SASKKKLYRG VRQRHWGKWV AEIRLPQNRM RVWLGTYETA EAAAYAYDRA AYKLRGEYAR  120
LNFPNLRDPS FLGLGDGARI AALKNAVDAK IQAICQKVKR QRQKKTAAKP AGIRDLPPAG  180
ALGAVESSSS SAKRGGESGC FSDDAWVAED SPESWYSGGA SGGVEAAEIE AYPLARLPSF  240
DPELIWEVLA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2063124163ATERF1
3gcc_A6e-2063124163ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161KVKRQR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101035.11e-76LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W22e-54ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLS8DBZ70.0S8DBZ7_9LAMI; Uncharacterized protein (Fragment)
STRINGevm.model.supercontig_79.431e-66(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-44ERF family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]