PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS60225.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GATA
Protein Properties Length: 148aa    MW: 16428.7 Da    PI: 11.1176
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS60225.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.92e-1691127135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg+
  EPS60225.1  91 CRHCGINSksTPMMRRGPNGPRTLCNACGLKWANKGV 127
                 ****988888************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062032.1E-162264IPR010402CCT domain
PROSITE profilePS5101713.1262264IPR010402CCT domain
SMARTSM004016.7E-1185144IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.885133IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-1286135No hitNo description
Gene3DG3DSA:3.30.50.102.6E-1590132IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.66E-1291132No hitNo description
PfamPF003205.0E-1491127IPR000679Zinc finger, GATA-type
PROSITE patternPS00344091118IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
GMNSQNHRNV GELPARSSLP QRAASLNRFR EKRKERCFEK KIRYTVRKEV ALRMQRKKGQ  60
FTSAKTVSDE AASSSADGNG SSGQEEQETL CRHCGINSKS TPMMRRGPNG PRTLCNACGL  120
KWANKGVLRD LSRVPVAAMP QQHASSEL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012828458.12e-80PREDICTED: GATA transcription factor 24-like
SwissprotQ8GXL71e-57GAT24_ARATH; GATA transcription factor 24
TrEMBLS8C0521e-105S8C052_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.B00543.1.p6e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-45ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]