PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS60174.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

DBB

Protein Properties

Length: 358aa MW: 38620 Da PI: 5.601

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS60174.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.5	4.3e-06	3	41	5	37
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++ +++l+C+ ++ lC +C + H+ H EPS60174.1 3 DCDFCGDRRAILYCRADSAKLCLSCDHHVHSAnglsrkH 41 6***************************99545566666 PP
2	zf-B_box	22.3	2.6e-07	44	85	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 ++C+++ +++ C +++ lC+dC H g H+ EPS60174.1 44 SQICDNCAAEPAASRCATDGLVLCQDCDWDAH-GvcaasaaHD 85 689************************98888.5566666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	7.2E-10	1	46	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.684	1	46	IPR000315	B-box-type zinc finger
CDD	cd00021	1.67E-5	4	34	No hit	No description
PROSITE profile	PS50119	8.859	42	89	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.4E-5	44	84	IPR000315	B-box-type zinc finger
CDD	cd00021	2.90E-5	46	75	No hit	No description
SMART	SM00336	2.1	47	89	IPR000315	B-box-type zinc finger

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MVDCDFCGDR RAILYCRADS AKLCLSCDHH VHSANGLSRK HVRSQICDNC AAEPAASRCA 60 TDGLVLCQDC DWDAHGVCAA SAAHDRSQVE GFSGVPSAFA LASSWGLEIE EKGVAACEWD 120 GLLEELMVPN ANPAAFAACG GELAAGKRSP TCGKQKQAIL KQLLELLADG DGAGDDGSAA 180 DGEDEERHPP LMQPTTAGGF TSLLMIQQTP KNKASIDTNK TQIWDFNLGR LRGQDDSSAM 240 EMEEYGTDHL SQHYGEILKE ASLAKRRGLL SSNQNSSFIH GPATSESNNR SLSSSSVLEK 300 NRSLGDFHFM DQSIPFRSNE VAAAAAAAAM TREDIETLAK NRGNAMQRYK EKKKTRRY

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MVDCDFCGDR RAILYCRADS AKLCLSCDHH VHSANGLSRK HVRSQICDNC AAEPAASRCA  60
TDGLVLCQDC DWDAHGVCAA SAAHDRSQVE GFSGVPSAFA LASSWGLEIE EKGVAACEWD  120
GLLEELMVPN ANPAAFAACG GELAAGKRSP TCGKQKQAIL KQLLELLADG DGAGDDGSAA  180
DGEDEERHPP LMQPTTAGGF TSLLMIQQTP KNKASIDTNK TQIWDFNLGR LRGQDDSSAM  240
EMEEYGTDHL SQHYGEILKE ASLAKRRGLL SSNQNSSFIH GPATSESNNR SLSSSSVLEK  300
NRSLGDFHFM DQSIPFRSNE VAAAAAAAAM TREDIETLAK NRGNAMQRYK EKKKTRRY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086854.2	1e-138	LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 14
TrEMBL	S8C0J7	0.0	S8C0J7_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.K01031.1.p	1e-130	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6703	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33500.1	1e-72	B-box type zinc finger protein with CCT domain

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]